UFO12255.5prime Sequence
1109 bp (1010 high quality bases) assembled on 2012-09-06
> UFO12255.5prime
AGTCGACATGTCATCTGTGAATCCGGAATACGATTATCTCTTTAAGTTGC
TGCTTATTGGAGACTCGGGCGTTGGAAAGTCCTGTCTTCTGTTGCGATTT
GCCGATGACACATATACAGAAAGTTATATCAGCACAATCGGAGTGGATTT
CAAAATCAGGACTATAGAACTCGACGGAAAGACCATTAAACTGCAAATCT
GGGATACTGCTGGCCAGGAGCGCTTCCGCACCATCACGTCTTCATATTAT
AGGGGCGCCCATGGCATCATTGTCGTATACGATTGCACGGACCAGGAGTC
TTTCAACAATGTGAAGCAGTGGCTGGAGGAGATCGAGCGGTATGCCTGTG
AGAATGTCAACAAGTTGCTGGTTGGCAACAAGAGCGACTTGACCACCAAG
AAAGTAGTCGACCACACCACAGCTGCGGAGTACGCCGCCCAGTTAGGCAT
TCCATTCCTTGAAACTTCGGCCAAGAGCGCCACCAACGTTGAGCAGGCCT
TCATGACGATGGCGGCGGAGATCAAGAATCGCGTCGGGCCGCCGTCCAGC
GCCACTGACAACGCTAGCAAAGTGAAAATCGATCAAGGACGTCCAGTGGA
AAACACCAAATCCGGTTGCTGCGCAAGCTTTCTAGACCATTCGTTTGGCG
CGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAAT
CACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACC
AATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGA
GTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGAT
ATCAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTATTCATTA
AGCATTCTGCCGACATGGAAGCCATCACAACGGCATGATGAACTGATCGC
AGCGGCATCAGCACCTTGTCGCTTGCGTATATATTTGCCATGGTGAACGG
GGGGCGAGAGTGTCATATTGTCACGTTAATCAACTGTGAACTCCACCCAG
GGATTGGCTGACGGAAAACATATTTCCCATAACCTAGAAATGAGGCCAAT
TCACGGTAA
UFO12255.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:06:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab1-RA | 1804 | CG3320-RA | 268..882 | 8..622 | 3075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:06:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21267225..21267453 | 428..200 | 1145 | 100 | Minus |
| 3R | 32079331 | 3R | 21266951..21267146 | 622..427 | 980 | 100 | Minus |
| 3R | 32079331 | 3R | 21267620..21267740 | 151..31 | 605 | 100 | Minus |
| 3R | 32079331 | 3R | 21267510..21267557 | 199..152 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:06:46 has no hits.
UFO12255.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:26 Download gff for
UFO12255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab1-RA | 308..935 | 1..626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:44:18 Download gff for
UFO12255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab1-RA | 259..886 | 1..626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:50:13 Download gff for
UFO12255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab1-RA | 259..886 | 1..626 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:50:13 Download gff for
UFO12255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21266947..21267145 | 428..626 | 98 | <- | Minus |
| 3R | 21267226..21267453 | 200..427 | 100 | <- | Minus |
| 3R | 21267510..21267557 | 152..199 | 100 | <- | Minus |
| 3R | 21267620..21267740 | 31..151 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:44:18 Download gff for
UFO12255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17092669..17092867 | 428..626 | 98 | <- | Minus |
| arm_3R | 17092948..17093175 | 200..427 | 100 | <- | Minus |
| arm_3R | 17093232..17093279 | 152..199 | 100 | <- | Minus |
| arm_3R | 17093342..17093462 | 31..151 | 100 | <- | Minus |
