UFO12258.5prime Sequence
428 bp (426 high quality bases) assembled on 2012-09-06
> UFO12258.5prime
AGTCGACATGGAAAACGGTCCGGAATTCAATTGGGAGTACAGCCATGGTG
GTCAGGGAAATCCCAACTACTCACAGATGGGAAGGGGTAGTACTCCTCCT
GGAGGCGGTGGTCGTCAGTGGCTGCACTCAAGTCAAGCGAACACCCAAAA
CTATTTGCATGGATCCAGTGGAATGGGATCGCACCAGAATAACGCATCTC
CAGGTGATCCATTCGCCTCCTACAACCAAAATATGATGAACATGTACACG
AATTTTAAGCCCAGTTACGGTCATTCTCAAGTTGGCCCGGCTTCGGTACA
GGGCATGGGCTCAGAGCCTGGTCTTGAAATGGGTAACAGAATGGGCCATT
CCATGCCCGAGTCTATGGGATTCGATGGAGGCATGGGTTCCGGCATGGGC
ATGAGCAATGGCCTTGGCGCTGGAATGT
UFO12258.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:06:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14926-RC | 738 | CG14926-RC | 71..490 | 8..427 | 2100 | 100 | Plus |
| CG14926-RB | 853 | CG14926-RB | 151..570 | 8..427 | 2100 | 100 | Plus |
| CG14926-RA | 763 | CG14926-RA | 96..515 | 8..427 | 2100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:06:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11342837..11343048 | 285..74 | 1060 | 100 | Minus |
| 2L | 23513712 | 2L | 11342638..11342780 | 427..285 | 715 | 100 | Minus |
| 2L | 23513712 | 2L | 11343100..11343168 | 76..8 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:06:28 has no hits.
UFO12258.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:20 Download gff for
UFO12258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14926-RA | 92..515 | 1..428 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:44:02 Download gff for
UFO12258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14926-RA | 92..515 | 1..428 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:50:03 Download gff for
UFO12258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14926-RA | 92..515 | 1..428 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:50:03 Download gff for
UFO12258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11342637..11342779 | 286..428 | 99 | <- | Minus |
| 2L | 11342837..11343045 | 77..285 | 100 | <- | Minus |
| 2L | 11343100..11343171 | 1..76 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:44:02 Download gff for
UFO12258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11342637..11342779 | 286..428 | 99 | <- | Minus |
| arm_2L | 11342837..11343045 | 77..285 | 100 | <- | Minus |
| arm_2L | 11343100..11343171 | 1..76 | 94 | | Minus |
