UFO12259.5prime Sequence
1087 bp (980 high quality bases) assembled on 2012-09-06
> UFO12259.5prime
AGTCGACATGCCCCGCGTGAAGCCCACCAAGAAGCTCGATGTTCTGGGAA
ATCTGGACCTGCGGCCGGAGGATGCCGTGGGGGACTATATCAGCTCTAAG
CAGCAGAACAAATTCTTCGTAATTCCACCGAACTCGGACTCTGCCGGCGA
CTCCATCGAACTGATATATGTGAACAATCTCCGCGAGCACGAAGCCATGC
TCAAGCTGCAGGAGGAGATGCTGACCAGTGCCAAGCGGCAGACCAAGCTG
AACTCCGCCCGGGTGAGGAACATGTACAAGATCCAGGAGCGGCTGAGGCG
GCGCTTCATCGAGGTGAACAGCTTCATCAAGGACTGCGCGGACAAAAAGA
GAGTGGCCGAGAAGACCGCCCAAGCGGAGACGCTCAACCATAAGGAGCTC
GGCGAGGGCATTGAGAGCTTCAAGGACTCGATCGGCGAACTCAAGGCCTT
TCGGGAGGCTCTCAAGGCCACCGTGCAGGAGTTCCAGCCCTACGAGAAGG
TGCTCGACGAGGTGGTGAAGGTATCCGACATATTCGTCTCGCCAAAGGAC
TGCACCGATCGCTGTGATGCGCTGATGCTGGCTCAAGTGGAGATCAACAA
GTTGGAGCATCAAAAGCTCCAGGACATCGAGAACATGCGGCAGCGTATGG
TGCAGATCACAAATGATGCGGCTCTAACTGTGCTGGGTCTAAAGAACGAT
CTGGCCAAACTGGAACGATCCTACAACGAGTCCAGAGTGCAGTGCCTCAG
ATGGGAGAAGATCCTGGCCCAGACCAAAGGACGCCATCAACAACAACTAC
ATGGACAAGGAGCGCACAATAGATGCGATTACCAACCTTCACCGAATCCT
TCTACGGCGAAGAGATGTACATTCGTTTCCCGCTCGCGGCGACTTGGACA
GGTGTTGATGCATCATGGGCGAAGTGAAATATTAACTGGCGTGTAAAGAA
ATCGATCATCTGATCCCTCGATAAGCACGAGAGCAGAGAATAAGTCGCTG
TGCGCAGCTTTCTAGAACATCGTGGCGCGCGGCCAGTAATTGTCTATCTA
ATCTATCATAATCTAAATCAACTAGCTAGGAATCTGC
UFO12259.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:06:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17564-RB | 1305 | CG17564-RB | 207..1211 | 8..1003 | 4705 | 98.6 | Plus |
| CG10750-RB | 1175 | CG10750-RB | 383..817 | 272..706 | 420 | 74 | Plus |
| CG10750-RA | 1175 | CG10750-RA | 383..817 | 272..706 | 420 | 74 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:06:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19298988..19299442 | 575..121 | 2275 | 100 | Minus |
| 2L | 23513712 | 2L | 19298642..19298929 | 864..576 | 1380 | 99.3 | Minus |
| 2L | 23513712 | 2L | 19299615..19299727 | 120..8 | 565 | 100 | Minus |
| 2L | 23513712 | 2L | 19298471..19298589 | 974..863 | 245 | 94.1 | Minus |
| 2L | 23513712 | 2L | 19300699..19300994 | 272..567 | 220 | 71.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:06:31 has no hits.
UFO12259.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:21 Download gff for
UFO12259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17564-RB | 116..1134 | 1..1010 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:44:04 Download gff for
UFO12259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17564-RB | 198..1216 | 1..1010 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:50:04 Download gff for
UFO12259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17564-RB | 198..1216 | 1..1010 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:50:04 Download gff for
UFO12259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19298439..19298587 | 865..1003 | 92 | <- | Minus |
| 2L | 19298642..19298929 | 576..864 | 99 | <- | Minus |
| 2L | 19298988..19299442 | 121..575 | 100 | <- | Minus |
| 2L | 19299615..19299734 | 1..120 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:44:04 Download gff for
UFO12259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19298439..19298587 | 865..1003 | 92 | <- | Minus |
| arm_2L | 19298642..19298929 | 576..864 | 99 | <- | Minus |
| arm_2L | 19298988..19299442 | 121..575 | 100 | <- | Minus |
| arm_2L | 19299615..19299734 | 1..120 | 96 | | Minus |
