UFO12260.5prime Sequence
1057 bp (970 high quality bases) assembled on 2012-09-06
> UFO12260.5prime
AGTCGACATGGCACGTGGACACCAGAAGATCCAGTCGCAGGCGAAGGCCT
CCGAGAAGCAGGCCAAACTAAAGAAGCAACAAGGACACAGTGCCAACGAC
CAGAAGAAGGCGGCCCAAAAGGCACTTGTCTATGTGTGCGCCGTTTGCAA
GTCGCAAATGCCCGATCCCAAGACGTATAAACAGCACTTCGAGAACAAGC
ATCCCAAGAACGACATACCCGAGGAGCTGAAGGAGGTCGCAAGCTTTCTA
GACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCA
TAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAG
TGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTG
AACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAG
TCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAG
TACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAAC
GGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCG
TATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTG
GCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGAC
GAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCAC
CGTAACACGCCACATCTTGCGAATATATGTGTAGAACTGCCGGAATCGTC
GTGTATTCACTCCAGAGCGATGAAACGTTTCAGTTTGCTCATGGAAACGG
TGTAACAAGGGTGACACTATCCCATATCACCAGCTCACGTCTTTCATTGC
ATACGAAATCGGATGACATTCATCAGCGGCAGATGTGATAAGCCGATAAA
CTTGTGCTTATTTTTTCTTTACGTTTAAAAGCGTAATCCAGCTGACGTCT
GTTTAGTAATGACACTGACTGAAATGCTCAACTGTCTTACATGCATGGGC
TATCACC
UFO12260.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:06:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15715-RB | 969 | CG15715-RB | 270..500 | 8..238 | 1155 | 100 | Plus |
| CG15715-RA | 735 | CG15715-RA | 233..463 | 8..238 | 1155 | 100 | Plus |
| CG18081-RC | 717 | CG18081-RC | 198..428 | 8..238 | 1020 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:06:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15836780..15836923 | 151..8 | 720 | 100 | Minus |
| 3L | 28110227 | 3L | 15834734..15834877 | 151..8 | 705 | 99.3 | Minus |
| 3L | 28110227 | 3L | 15836162..15836250 | 238..150 | 445 | 100 | Minus |
| 3L | 28110227 | 3L | 15834365..15834453 | 238..150 | 325 | 91 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:06:34 has no hits.
UFO12260.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:22 Download gff for
UFO12260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15715-RA | 227..461 | 1..238 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:44:07 Download gff for
UFO12260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15715-RA | 229..463 | 1..238 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:50:05 Download gff for
UFO12260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15715-RA | 229..463 | 1..238 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:50:05 Download gff for
UFO12260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15836162..15836248 | 152..238 | 100 | <- | Minus |
| 3L | 15836780..15836927 | 1..151 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:44:07 Download gff for
UFO12260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15829262..15829348 | 152..238 | 100 | <- | Minus |
| arm_3L | 15829880..15830027 | 1..151 | 98 | | Minus |
