UFO12261.5prime Sequence
1142 bp (1006 high quality bases) assembled on 2012-09-06
> UFO12261.5prime
AGTCGACATGGCTGAAGATAGCTTAGCTGATCAGCTGAATGTCCCAGAAT
GGTTAAATGAGCAGTTTGTTACAGATGTTCTGAGATCCCACGAAAAGGAA
CCGGATCTCAGGGTAACCAAATTGGACTTTACTCCAGGAAGTGCCAAAGG
AGATAACTATGCCAGTGTTATAATTCGTGCACGGGTGGAATATATAACCC
AGAAGGGATTCTTTTCCAAGTCGCTCATTATTAAGACGGTTTTGGAAATG
TTTGCCGGTTCAGCTCTATTTAAAACTGAAATAGGCATGTATAGGAAGGT
CCTGCCGGAGTTTGCGAGAATATTGCGAGAAAACAATGATACTTCCAGGC
TTTACGCAGAATGTATATATTATAGCCTGGAACCGAGTCAAGTTATGATC
TTTGAGGATCTTGGCGAGATGGATTATGCTATGGTGCGAGATCGTGTGCT
CACACATGGAGAGATATGTGGTGCCTATTCTAAATTGGCCAAATTTCACG
CACTTAGCATGAAGATCATTAACGAGCGACCAGAATTCGTTAAGGAATTC
AAAGATGGCATTTGTCTAGTTGATATTCCCTATATGAGCTCAGGCATGGG
CCCGTTTAAGGATTTTTTGGGCCGCATTCCTGAGTTGGACAGATACAAGA
CGCACTTTGAGAAGATAGAAGTCCATTTTATAGACCGACTGCGTGATATT
ATGAAAGAGTACCAAACCAATCCTCAGCCTGGCTACTACGTTCTCTGCCA
TGGTGACTACCACACACGTAACATAATGGTTAAACATAATAAGGAATCCG
GAGGCTTCGAGGATTGCATGCTGCTTGATTACCAAAGGATGCTATGTTGC
TCCTCTTGCCTTCGACCCTTATGTATTCCATTTATATGCTAATGAACCGA
AGAACAGCGCATTGGGGAACTAGAGACCTTACTGAACTACTACTTCTTCA
GTTCTAAGGAAACACTTAGTAAAGAATTGGCTACCTGTGCAAACTGCCCG
ATCCTCCTGCGTTCTGGAAGGAAATGTTTCGCCTTAAGATTATGAGTTTC
TTATTTTCTCACACCTACTTGCCATGTCGGTAGGTTCTTTAACCCTTGAA
CCGCGACTTACCGAGAAACCGAATGATTACTTACCGGATTTT
UFO12261.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:07:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31370-RB | 1408 | CG31370-RB | 98..1225 | 8..1142 | 5090 | 97.4 | Plus |
| CG13659-RA | 1301 | CG13659-RA | 641..935 | 592..888 | 360 | 75.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:06:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25302561..25303079 | 8..526 | 2595 | 100 | Plus |
| 3R | 32079331 | 3R | 25303141..25303648 | 525..1037 | 2165 | 97.1 | Plus |
| 3R | 32079331 | 3R | 25301597..25301836 | 592..831 | 330 | 75.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:06:58 has no hits.
UFO12261.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:29 Download gff for
UFO12261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31370-RB | 90..1192 | 1..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:44:26 Download gff for
UFO12261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31370-RB | 90..1192 | 1..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:50:19 Download gff for
UFO12261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31370-RB | 90..1192 | 1..1108 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:50:19 Download gff for
UFO12261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25302553..25303079 | 1..526 | 99 | -> | Plus |
| 3R | 25303143..25303656 | 527..1044 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:44:26 Download gff for
UFO12261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21128275..21128801 | 1..526 | 99 | -> | Plus |
| arm_3R | 21128865..21129378 | 527..1044 | 97 | -> | Plus |
