UFO12262.5prime Sequence
1086 bp (983 high quality bases) assembled on 2012-09-06
> UFO12262.5prime
AGTCGACATGTCGATGGATCCATCGGTTTCTCTAGAGGATCTGGAGCGAC
GTCGTCGTCGCGCCAGTTCCGCCCGCAAGCAGTCACATACTCCCCAGCCA
GCATCTCACCTGGCGGATTCGGAGGCCATGGCCGTAATCAATGAGATATT
TAATCCCACGCTGAAGCTGCCGGAGTCCAGTGGCCACTATACGCTGCCCG
AGGAGATGAGGGCCGATGATAATGTGGCGCCCCATGAACTGGACATTGCC
AAGCTGGCGGAGCTGAAGGAAGTCTTCTCGCTCTTCGATACGGACTGCGA
TGGACTGATCTCGAAGGATGATCTACGGTTCACCTACACGGCGCTGGGCA
ACGAACCGAACGAACAGCTACTGGAACAGATGATGCAGGAGGCCAAGGAG
CCGCTCGACTATGAAGCCTTCGTTCGGCTGATGAGTCGTCGCACCCAGGA
ACTGGATCCCGAGGATGTTTTGTTGGAGGCCTGGAGCAAATGGGATGACC
ATGGCACGGGCAAGATCGACGAACGCAAAATCTATGAAGAGCTGACCAAC
TATGGTGACAAAATGACCCTCAACGAGGCCAAGGAGGCTCTTAGCCACGC
CCCGATGGCCAAGCCCAAGTCCTTGGAGGAGCCGCCCATGATCGATTACC
CGGCCTTCTGTCGCATGCTAAGTGGAATGCGGAAGCGGAAAGGGGAAGCA
AGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAA
TCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGT
CATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGGCGGCAACC
GAGCGTTCTGAACAAATCCAGATGGGAGTTCTGAGGTCATTACTGGATCT
ATCAACAGGAGTTGAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCA
CTCATCGCAGTACTGTTGTATCATAGGCATTCTGCGACTTGCAGCATCAC
AACGGCTGATGACTGATCGCTAGCGGCATCAGCACTGTCGCCTGCCTTAA
ATTTGCCATGTGAAAACCGGGGCGAGAGTTGTCATA
UFO12262.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:07:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33098-RF | 1182 | CG33098-RF | 165..854 | 8..697 | 3450 | 100 | Plus |
| CG33098-RE | 1169 | CG33098-RE | 152..841 | 8..697 | 3450 | 100 | Plus |
| CG33098-RB | 1049 | CG33098-RB | 32..721 | 8..697 | 3450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:07:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12387979..12388235 | 272..528 | 1285 | 100 | Plus |
| 3R | 32079331 | 3R | 12387705..12387928 | 50..273 | 1120 | 100 | Plus |
| 3R | 32079331 | 3R | 12388298..12388466 | 529..697 | 845 | 100 | Plus |
| 3R | 32079331 | 3R | 12387596..12387637 | 8..49 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:07:02 has no hits.
UFO12262.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:30 Download gff for
UFO12262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33098-RC | 25..552 | 1..528 | 99 | -> | Plus |
| CG33098-RC | 615..786 | 529..701 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:44:28 Download gff for
UFO12262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33098-RB | 25..724 | 1..701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:50:21 Download gff for
UFO12262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33098-RB | 25..724 | 1..701 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:50:21 Download gff for
UFO12262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12387589..12387637 | 1..49 | 93 | -> | Plus |
| 3R | 12387705..12387926 | 50..271 | 100 | -> | Plus |
| 3R | 12387979..12388235 | 272..528 | 100 | -> | Plus |
| 3R | 12388298..12388469 | 529..701 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:44:28 Download gff for
UFO12262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8214020..8214191 | 529..701 | 98 | == | Plus |
| arm_3R | 8213701..8213957 | 272..528 | 100 | -> | Plus |
| arm_3R | 8213311..8213359 | 1..49 | 93 | -> | Plus |
| arm_3R | 8213427..8213648 | 50..271 | 100 | -> | Plus |
