UFO12263.5prime Sequence
1071 bp (965 high quality bases) assembled on 2012-09-06
> UFO12263.5prime
AGTCGACATGGGAAGGCGATTGCCCAGCTTTTGGCTGCTGCTCCTGCAGA
GCGTGTGTTTCAGCCAGGCCAGCTTTTCGGAGCTAAACAATTCGGATCCC
AAGTTCAGCGGTCCAATCAACAACTCAACAGTTCCCGTGGGACGGGATGC
CCTACTCACGTGTGTTGTCCACGACCTGGTTAGCTTCAAGGTGGCCTGGC
TGCGAGTGGACACGCAGACGATACTGAGCATCCAGAACCACGTCATCACC
AAGAACCATCGCATCTCCATCTCCCACACGGAGCATCGGATCTGGCAGCT
AAAAATACGCGATGTTCAGGAATCGGATCGCGGATGGTACATGTGCCAAA
TCAACACGGATCCCATGAAGAGCCAAATGGGCTACCTGGATGTGGTGGTG
CCGCCAGACATTGTAGACTATCAAACCAGTCAGGATGTGGTTCGTTCCAC
GGGACAGAACGTAACACTCACTTGCAGTGCAACGGGAGTGCCCATGCCCA
CCATCACCTGGCGTCGCGAGGAAGCGACTCCGATACTGATTTCAGACGAC
GGCGATCGGGAAGTGTTCAGCGTGGAGGGTCAGAATCTCACCCTGTGGCA
AGTGCAGCGCTCCCACATGGGCGCCTATCTCTGCATCGCCTCCAACGGAG
TGCCACCCACAGTGAGCAAACGCGTCATGCTGGTGGTGAATTTTGCGCCC
ACGATCTGGACACGCTACGATACCATCTACGTGGGCCTGGGCCAGAAGCT
GACGCTGGAGTGCATCACAGAATCGCAGCCGGCATCGGTGAACTTCTGGC
TGAGGGATTCGCAATTGCTGCAAGGAGGTTCCTACGAGTCGGTCTCAGTG
GACCACGTCTTCCGGATCGTGATGCGGATCACCCTGCGTCCAATAACGAA
AAGAGATTTCGGAGAGTACATATGCCAGGCAAAGAATGCGATGGTCAGAC
GATCGGATATACCGTGCCACCATACGTCAGAGCATGACAGCACTCGCATC
ATACTTCCTTCGCGAAGTCAGTCATGTCATCGAGATTACCTCGCAAATAT
GTCTGAATAGAGCTGCCAGGT
UFO12263.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:07:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11320-RB | 1327 | CG11320-RB | 191..1261 | 8..1066 | 4855 | 97.7 | Plus |
| CG14010-RB | 2988 | CG14010-RB | 547..835 | 134..422 | 305 | 75 | Plus |
| CG14010-RD | 2335 | CG14010-RD | 547..835 | 134..422 | 305 | 75 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:07:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6617760..6618116 | 692..336 | 1770 | 99.7 | Minus |
| 2L | 23513712 | 2L | 6617455..6617706 | 944..693 | 1230 | 99.2 | Minus |
| 2L | 23513712 | 2L | 6618173..6618418 | 338..93 | 1230 | 100 | Minus |
| 2L | 23513712 | 2L | 6621426..6621510 | 92..8 | 425 | 100 | Minus |
| 2L | 23513712 | 2L | 5611028..5611090 | 398..336 | 255 | 93.7 | Minus |
| 2L | 23513712 | 2L | 5640292..5640349 | 393..336 | 215 | 91.4 | Minus |
| 2L | 23513712 | 2L | 5635667..5635733 | 681..615 | 185 | 85.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:07:04 has no hits.
UFO12263.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:31 Download gff for
UFO12263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11320-RB | 183..1264 | 1..1071 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:44:31 Download gff for
UFO12263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11320-RB | 183..1264 | 1..1071 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:50:23 Download gff for
UFO12263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11320-RB | 183..1264 | 1..1071 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:50:23 Download gff for
UFO12263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6617416..6617706 | 693..980 | 96 | <- | Minus |
| 2L | 6617760..6618115 | 337..692 | 99 | <- | Minus |
| 2L | 6618175..6618418 | 93..336 | 100 | <- | Minus |
| 2L | 6621426..6621516 | 1..92 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:44:31 Download gff for
UFO12263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6617416..6617706 | 693..980 | 96 | <- | Minus |
| arm_2L | 6617760..6618115 | 337..692 | 99 | <- | Minus |
| arm_2L | 6618175..6618418 | 93..336 | 100 | <- | Minus |
| arm_2L | 6621426..6621516 | 1..92 | 95 | | Minus |
