UFO12268.5prime Sequence
1108 bp (1009 high quality bases) assembled on 2012-09-06
> UFO12268.5prime
AGTCGACATGAATGGCACCACGACAGCAGAGCAGGATGCTGACAACGTGA
TTCGCATCCTGGTGGCTACCGACAACCACCTGGGCTATGGCGAAAAAGAC
GCGGTGCGCGGCGAGGACAGTTTCACGGCCTTCGAGGAGATCCTGGAACT
GGCGGTGTCCGAGGATGTGGACATGATTCTGCTGGGAGGTGACCTCTTCC
ACGACGCCGTGCCCAGCCAGAATGCGTTGCACAAATGCATTGAGCTCCTG
CGGCGCTACACATTCGGTGATCGTCCTGTTTCCCTGGAGATTCTCAGCGA
CCAGGGGCAATGCTTCCACAATGCCGTTAACCAGTCGGTGAATTACGAGG
ATCCCAATCTGAACATTGCCATTCCAGTATTCTCTATTCATGGCAATCAC
GACGATCCCAGTGGCTTCGGTCGTTTAAGTTCTCTGGATTTGCTGAGCAC
CTCGGGACTGGTTAACTATTTTGGTCGGTGGACCGATCTAACCCAGGTGG
AGATCAGCCCCGTCCTGATGCGCAAGGGAGAGAGCCAATTGGCTTTGTAC
GGACTTAGCCACATCCACGACGGCCGACTGGCAAGGCTTATCAAGGATTT
TAAGGTGAAGTTTAACTGTCCCGAGAACGTTGCTAATGGCGAAGACGGTA
ATGAGTCCAAAGAGGAGGAGGATTGGTTCCATCTGTTAGTGGTACATCAG
AACCGCGCCGATCGGGGACCAAAGAACTATCTACCTGAGGACCTGTTGCC
ATCGTTTTTGCATCTGGTGATTTGGGGTCACGAACACGATTGCCGCATCG
AGCCAGAGGAGAATGCCAAAAAGCGCTTCTATGTCTCTCAGCCGGGCTCT
TCGGTGCCCACCTCCTTGTCCGAGGGGTGAGGCCAGAAAAAGCACGTCGG
CCTGCTCGAGATCTACAAGGGAAAATTCAAGCTTAGCCGCTTCGCTGGAG
ACTGTGCGCTTTCGTCTATGATCCGTCGTACTGGCGACATGCGACGATAG
GCCTTGTCGAGTGATGCCTCTACAGTTTTAATTCGCCCAAGACTGATTGA
AGCAATGATCGAGCGGCGTAGCTACACCCGGTCATCTTAAGACAGCAGCT
ACGTCTAT
UFO12268.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:07:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mre11-RA | 2013 | CG16928-RA | 90..1197 | 7..1091 | 4875 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:07:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11282459..11283214 | 235..985 | 3475 | 98.5 | Plus |
| 2L | 23513712 | 2L | 11282179..11282406 | 7..234 | 1140 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:07:13 has no hits.
UFO12268.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:33 Download gff for
UFO12268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mre11-RA | 80..1175 | 1..1076 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:44:38 Download gff for
UFO12268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mre11-RA | 83..1178 | 1..1076 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:50:29 Download gff for
UFO12268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mre11-RA | 83..1178 | 1..1076 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:50:29 Download gff for
UFO12268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11282172..11282406 | 1..234 | 98 | -> | Plus |
| 2L | 11282459..11283319 | 235..1076 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:44:38 Download gff for
UFO12268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11282172..11282406 | 1..234 | 98 | -> | Plus |
| arm_2L | 11282459..11283319 | 235..1076 | 96 | | Plus |
