UFO12269.5prime Sequence
1107 bp (1002 high quality bases) assembled on 2012-09-06
> UFO12269.5prime
AGTCGACATGTTCGGTGGACAGCAGCCAATACTCGTGTTGAGTCAAAACA
CAAAGAGAGAATCGGGCCGCAAAGTGCAGTTGGAGAACATCCAAGCCGGA
AAGGCCATCGCCGATGTGATACGCACATGTCTGGGGCCACAGGCCATGCT
GAAGATGCTGATGGACCCAATGGGCGGCATCGTGATGACCAACGATGGCA
ACGCCATCCTGCGTGAGATCACTGTGCAGCACCCGGCGGCCAAGAGCATG
ATTGAAATTGCTCGCACACAAGACGAGGAGGTTGGCGATGGTACCACATC
GGTCATCGTCCTGGCCGGCGAGATGCTGGCCGCCGCCGAGCCCTTCCTCC
AGCAACAGATCCACCCCACTGTTATCATTCGCGCCTATCGCGAGGCCCTC
GAGGACATCGTCGGCCACCTGCAGTCCCAGCTTAGCATCCAGTTGGACGT
CAAGGATAAGGCCAAGATGGCCGATGTGGTCAAGGCCTGTGTGGGCACCA
AGTTCATTGGCAAGTGGTCCGACCTTGCCGTCAAGATTGCCCTGGACGCA
GTCGAGACAGTGACGCTAAGTGAGAACGGCCGTCTGGAGGTAGACATTAA
ACGCTATGCCAAGGTGGAGAAGATCCCGGGTGGCGCCATCGAGGAGTCGT
GTGTTCTTAAGGGCGTGATGATCAACAAAGACGTGACGCATCCCAAGATG
CGACGCCTCATCGAGAATCCCCGCATCGTGCTGCTTGACTGCTCGCTGGA
GTACAAGAAGGGCGAGAGCCAAACCAACGTGGAGATAATCGGGGAGCAAG
ACTTCACCCGCATGCTGCAGATCGAGGAGGAGTTTGTGCAGCGCATCTGC
GCCGACATCATTGCCGTGAAACCGGATTTGGTATTCACTGAGAAGGTGTC
CTCGATCTCGCCAGCACTATTTGCTGAAGCTGGCATCACGGCATCCGTCG
GCTGCGTAAGACTGAACAAATCTTGCGCATCCGCCGGCGCTGTGGTGCAC
ATCGTGGAACGCACTGAAGAGCTAATCGAAGAGAATGGTGGGCACGGGAG
CTGGAACTGTTCGAAAGTCAAAAGATCGTCGATGAGTTACTTCCTTTCGT
GTACGGA
UFO12269.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:07:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cctgamma-RD | 2071 | CG8977-RD | 198..1297 | 8..1107 | 4930 | 97.4 | Plus |
| Cctgamma-RC | 2086 | CG8977-RC | 213..1312 | 8..1107 | 4930 | 97.4 | Plus |
| Cctgamma-RB | 2165 | CG8977-RB | 292..1391 | 8..1107 | 4930 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:07:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16648133..16648634 | 102..603 | 2510 | 100 | Plus |
| 3R | 32079331 | 3R | 16648700..16649185 | 603..1087 | 1660 | 93.5 | Plus |
| 3R | 32079331 | 3R | 16647988..16648050 | 42..104 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:07:15 has no hits.
UFO12269.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:34 Download gff for
UFO12269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cctgamma-RC | 223..1190 | 1..965 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:44:40 Download gff for
UFO12269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cctgamma-RB | 286..1253 | 1..965 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:50:31 Download gff for
UFO12269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cctgamma-RB | 286..1253 | 1..965 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:50:31 Download gff for
UFO12269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16647988..16648049 | 42..103 | 100 | -> | Plus |
| 3R | 16648135..16648634 | 104..603 | 100 | -> | Plus |
| 3R | 16648701..16649066 | 604..965 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:44:40 Download gff for
UFO12269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12473710..12473771 | 42..103 | 100 | -> | Plus |
| arm_3R | 12473857..12474356 | 104..603 | 100 | -> | Plus |
| arm_3R | 12474423..12474788 | 604..965 | 98 | == | Plus |
