UFO12270.5prime Sequence
828 bp (826 high quality bases) assembled on 2012-09-06
> UFO12270.5prime
GTCGACATGGCAATCCAACTGGACAAGATTCTGCAGGACATCGCCAAAGA
AAAGGTGCTGCATCCAAACAATGGCGGCGCCAGCAAGCAGGAGTAGGAGG
AGGCGTGGGCCAGGATCGGGCGTCTCAACAAGCTCTCTGTGCACGAATCG
CGCTCCATCTTCATAGTGCTCCAAAAGAAGTACGAGCAGGAAAAGCTAAA
GGGCAATTCGGCGTGGAAGCTCTTCAGTCTGATGCATCAGATCCATCAGG
AGCCTAAAATCTCAATCAAGGAGGAGAATGATCAAGTACCCATGGAGGAG
GTGGAGGAGTACGAAATGCTGGAGGTGCAGGAGCCTGAGGACGAGGATGA
CGCCCATCAGTACGGACAGCACACCAACTCTACCGGCTCGGCGTCCTCCG
ACGGCGAAAGCCCCACAAAGTCACACAGCTCTGGTTCGCCAGAAAAGGAC
GAGCGGTTGGCGTACGCCAAACCCAACGTCGACACTCCTCGCCCAGCCAT
CGAGGAGAAAAAGCTGCTCAACACACTGGCTAACAACACACCGCGAAGTA
GCTCGCTGTCCGCCGCCGCAGCAGTACTGCAAAAGAAGGGAATTACTGTG
AAGAAGACGCCCAGCTCCGCAGCAGCACCGAAACCGGCTATTGTGCAACA
GGCGCCAGCCAGTGGGCAAAGATCAAGCTCCTCGCGCACCACCATTCAGC
TGCCAGATTCTTTGAAGCGCAAACTTTCGGAGGAGTACACCTCGTCATCG
GCGCAAAAAAGCAGACCAAGACCACGAGCCCGATACAAGCCGCTTCATCG
GCAGCCGCAACTTCAGTGCACACCAGCG
UFO12270.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:06:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Map60-RA | 1814 | CG1825-RA | 163..985 | 7..828 | 4015 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:06:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9591365..9591915 | 279..828 | 2645 | 99.1 | Plus |
| 2R | 25286936 | 2R | 9591029..9591300 | 7..278 | 1345 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:06:53 has no hits.
UFO12270.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:27 Download gff for
UFO12270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Map60-RA | 197..1026 | 1..828 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:44:23 Download gff for
UFO12270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Map60-RA | 156..985 | 1..828 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:50:16 Download gff for
UFO12270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Map60-RA | 156..985 | 1..828 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:50:16 Download gff for
UFO12270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9591022..9591300 | 1..278 | 98 | -> | Plus |
| 2R | 9591365..9591915 | 279..828 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:44:23 Download gff for
UFO12270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5478527..5478805 | 1..278 | 98 | -> | Plus |
| arm_2R | 5478870..5479420 | 279..828 | 99 | | Plus |
