UFO12271.5prime Sequence
1087 bp (999 high quality bases) assembled on 2012-09-06
> UFO12271.5prime
AGTCGACATGTTAAAGCTAGGTCTGGTCATCTTCTGCGTGTTGGTCGCTA
GTGGGCCGACGTGGAGCGCCCGCACCGTGGACAGTCACCTGGGGCAAAAG
GATCTCAGCCGCCTGCAAAAAGTTTTCGTGGACGGATTTGGTTCCAGTGA
CCTGCAGTCGATCTTCTTCTCCAGCCTAAACATTCAACTGACTGATGCCA
CTCAGAAGGAGCCGTTGTGCAAGAAGATTGCTACGCTGCATTCCGAATCC
AAGCTGAACAGCTTCGAAAAAGACTACTACTACATTGGTGCTAGCAGAAA
CCTGGGTTGCTCCGCTAAGATTGACGAGGGTCTGCTTTCCAAGGTGTATA
GTTCCCTGAACTCGGAGCTCGGCAGCTCTCAGGAGATCTTCTACCGCGTG
GTCACCCACAAAGTGCTCGGCGTGGAGATCAATGAAGCCACTCAGGAAAA
ACTAGTGAAGCGTTTGCAAGAACTGCTCAAGAAGGACGACACACTCAGCG
GCCTGGGATACGCTTTCAATGTTGCTCCACTTCTGGGTGCCAGTGCCTCC
TTTATCGCAAATCGCGTGGAGGATGCCATCGTGCAAGCAGATGAAGTTGA
CGGCAAGCTCTTGCAATTCGAAGGCGGTCTCAGTATCACATCCCTGATCA
TCAATGGTGCTTTCGGTGTGAGCAAGACCTTTAACAAGCCCGTGCCCATT
ACTGCTGACCAGGCAGTTAAGTTTGCTAACTACTTCCTTAGCCGCCGATC
CGTCCAAACCGCCAAAGGAGCTCATGTGCTAATCGAGGCGCTGAAGACTA
TTAGTGGAGCCGATAAAATTGCTCCCGTTTGTGTGCAGCTCATTGGCAAC
GGTCAATTGGACGCTCAGTCGCCGACTCTGAACGTAGCCGTTGTGATCTG
CTCGGCAGCCTTTGTCACCTGCCCCCAAGTCATCAATGCAAAGTTATTCG
CAGAGGACAGCTCTGTTTAGCTGATAAATCACCTGTGGCCTCGAAATCCT
CGACAAACCACCTATGTGGCTGATTTGGCCAGCTAGCCAGCTCGCGGCGT
TTAACAGCGGGATGACTGCAATGTGTTCTAACCGACC
UFO12271.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:06:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| OstDelta-RB | 2198 | CG6370-RB | 190..1251 | 8..1057 | 4970 | 98.6 | Plus |
| OstDelta-RA | 2201 | CG6370-RA | 190..1251 | 8..1057 | 4970 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:06:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17765583..17766392 | 1057..260 | 3470 | 97.5 | Minus |
| 2R | 25286936 | 2R | 17766461..17766701 | 259..19 | 1205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:06:56 has no hits.
UFO12271.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:28 Download gff for
UFO12271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6370-RA | 321..1403 | 1..1070 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:44:24 Download gff for
UFO12271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| OstDelta-RA | 184..1266 | 1..1070 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:50:18 Download gff for
UFO12271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| OstDelta-RA | 184..1266 | 1..1070 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:50:18 Download gff for
UFO12271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17765568..17766392 | 260..1070 | 97 | <- | Minus |
| 2R | 17766461..17766711 | 8..259 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:44:24 Download gff for
UFO12271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13653073..13653897 | 260..1070 | 97 | <- | Minus |
| arm_2R | 13653966..13654216 | 8..259 | 98 | | Minus |
