UFO12274.5prime Sequence
1134 bp (1012 high quality bases) assembled on 2012-09-06
> UFO12274.5prime
AGTCGACATGTCTGCGGCCGAACTCGAGGCGGAGGCTTCAGCCCAGGAGC
AACAATCCCAGCAACAACAACAAAATCAATCACAAAGCGAGGAGATAAAT
ACAAACACTGCCATCAATGCAAATGCAACCACAACAAATAGCTACAACAA
TAATTTAGATACGGAAACCCAGCTTCAGATGCACCAGGATCCGCAGCAGC
AGCAGGAACTCGAGGGCAATAGCAACAATGGCATCACAGGACTCGGCCTC
AGTCTGATGAACTCCTCACCGCCGCCGCACAGCTACCGACATTCGCGGGC
CTATCGCCACTTCAAGAATCCGCCACAGCCCCACATGTGCATCCGCACCA
CCACGGAGGCGGGCGAGGAGCTCTTCATCAATGTCCTCAGCTGGACGCGC
ATTGTGATACCGCAGGAGCCCAGCGATCCCATTCCCCTTTACGGAGGCAT
GCGGGTACCGCCTGGCAGCCCACGCAGTCCTCCCATTGTCTTTGCCGTAA
TGGCCAATCCGGAGGTGCTCAAAGACTCCGGACGTCACAGCAAAGATCCT
GAGGAGCGACGAGCTATGGTGGAGCTGATGTGCGACTTTGTGGAGGCTAT
GAATCCAGGCGTGAAATTAGTCAGAAACGCCGTAATACTCAAGGATCGCG
ATATCTCCGGCGAGCTGAAGGATGTCTGGAATGCCGTTCAGGCGCAGCGC
GATCGCGAGAGGGAGGAGCAGATGATGCAGCAGCGCCAGCAGCAGCACTA
CCAGAACATCACCACGCAACAGATGTTTCCCAAATCGCCGGATGCATCGC
GGGCAGCTAGTGCTGGTGCTGCAGTGAACGAGGCCAGCTCGCCGCCGGCT
CACTTGTCTGAGCCGCTGCTGGTAGAGCAGGAAATGGCAATGGCAATGGC
ATCACCCTGTCCGTGTTTGCCCAGCAGCTGGACAACAAAGTGGCCAGCGA
GCAGGTGAGCAGCAGGAGCAATCGCCAGTTTCGAGATGCTTGCGTGGAAT
CAAACGGATGCAGCAGCTCGCTGATGGATCACAACCTGTGCTGGAACATC
AGCCGGTGGCAGTGGAAGACGACCAGAAGTTAAAGTGCACCCACCCGCAG
CCTACAATGGGTGCTAGCACTTCCACCCAGTCAA
UFO12274.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:07:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4022-RC | 4262 | CG4022-RC | 632..1756 | 7..1126 | 5155 | 97.9 | Plus |
| CG4022-RB | 2778 | CG4022-RB | 686..1810 | 7..1126 | 5155 | 97.9 | Plus |
| CG4022-RA | 2394 | CG4022-RA | 776..1900 | 7..1126 | 5155 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:07:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9409517..9409967 | 457..7 | 2255 | 100 | Minus |
| 3L | 28110227 | 3L | 9408685..9409194 | 1126..622 | 1860 | 94.5 | Minus |
| 3L | 28110227 | 3L | 9409263..9409433 | 624..454 | 855 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 18:07:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6888 | 50..236 | 188 | 60.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2533 | 44..227 | 182 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2796..2992 | 44..239 | 171 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2385..2494 | 44..152 | 151 | 63.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1062..1117 | 717..772 | 135 | 75.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1127..1256 | 44..167 | 133 | 59.8 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3294..3417 | 44..173 | 122 | 58.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2383 | 170..227 | 114 | 69 | Plus |
UFO12274.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:37 Download gff for
UFO12274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4022-RA | 771..1906 | 1..1132 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:44:49 Download gff for
UFO12274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4022-RA | 772..1907 | 1..1132 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:50:39 Download gff for
UFO12274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4022-RA | 772..1907 | 1..1132 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:50:39 Download gff for
UFO12274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9408677..9409191 | 625..1132 | 94 | <- | Minus |
| 3L | 9409263..9409432 | 455..624 | 100 | <- | Minus |
| 3L | 9409520..9409969 | 1..454 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:44:49 Download gff for
UFO12274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9401777..9402291 | 625..1132 | 94 | <- | Minus |
| arm_3L | 9402363..9402532 | 455..624 | 100 | <- | Minus |
| arm_3L | 9402620..9403069 | 1..454 | 99 | | Minus |
