UFO12276.5prime Sequence
1090 bp (995 high quality bases) assembled on 2012-09-06
> UFO12276.5prime
AGTCGACATGAAGGTCACCGTCTGCTTCGGCGACGTTCGCATTCTGGTTC
CCTGTGGTTCCGGCGAACTCCTCGTCCGCGATCTCGTCAAGGAGGCCACG
CGACGCTACATCAAGGCGGCCGGCAAGCCCGATTCCTGGGTGACCGTGAC
GCATCTCCAGACACAGTCGGGCATCCTCGATCCGGATGATTGTGTCCGCG
ACGTGGCCGACGATCGGGAGCAGATATTGGCGCACTTTGATGACCCAGGA
CCCGATCCAGGAGTTCCGCAAGGAGGCGGAGATGGAGCATCGGGCAGTTC
GTCCGTTGGCACCGGTTCGCCGGACATCTTTCGCGATCCCACCAACACGG
AGGCGCCCACCTGTCCGCGGGATCTCTCCACGCCACACATCGAGGTCACC
AGCACCACATCGGGACCGATGGCTGGACTCGGAGTTGGACTGATGGTGCG
TCGCAGCAGTGATCCCAATCTGCTGGCCTCGCTGAAGGCAGAGGGCAGTA
ACAAACGCTGGTCGGCGGCGGCTCCCCACTACGCTGGCGGGGATTCGCCG
GAGCGCCTGTTTCTTGACAAGGCCGGTGGCCAGTTATCGCCACAGTGGGA
GGAGGACGACGATCCCAGTCATCAGCTAAAGGAACAGCTGCTACATCAAC
AGCAGCCCCATGCTGCTAATGGAGGCTCCTCCTCCGGTAACCATCAGCCG
TTTGCCCGATCCGGTCGCCTGTCGATGCAATTTCTTGGCGATGGCAATGG
CTACAAGTGGATGGAGGCAGCCGAGAAACTTCAGAATCAGCCGCCAGCCC
AGCAGACATATCAGCAGGTTCTCATCATGCTGGTCATGGTCAAAACGGTG
CCTACTCCAGCAAGTCCTTGCCCAGGGAGAGCAAGCGAAAGGAGCCCTTG
GACAGGCATATGATCCATCAGGAGAGGATGGTGAATGCTGCTGATCATCA
CGAGTACGCAGTCGCTGGGACTACTGCTCTGCGACAGAGCATGGCGTGGA
CTGTGTGCACATGTGGAGCGCCAGCGACCAAAGAGAACGACTGCTCCGAT
GATCGCAACTTGGAATCATGGATTCAGCTTATAGACTACG
UFO12276.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:07:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| baz-RC | 11877 | CG5055-RC | 1063..2171 | 4..1084 | 4765 | 96.8 | Plus |
| baz-RA | 11772 | CG5055-RA | 1063..2171 | 4..1084 | 4765 | 96.8 | Plus |
| baz-RD | 15726 | CG5055-RD | 5138..6125 | 125..1084 | 4175 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:07:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17188990..17189820 | 126..950 | 3860 | 99 | Plus |
| X | 23542271 | X | 17161068..17161191 | 4..127 | 605 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:07:32 has no hits.
UFO12276.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:38 Download gff for
UFO12276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| baz-RA | 1036..2046 | 1..996 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:44:51 Download gff for
UFO12276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| baz-RA | 1059..2069 | 1..996 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:50:40 Download gff for
UFO12276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| baz-RA | 1059..2069 | 1..996 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:50:40 Download gff for
UFO12276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17161064..17161191 | 1..127 | 98 | -> | Plus |
| X | 17188992..17189820 | 128..950 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:44:51 Download gff for
UFO12276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17055097..17055224 | 1..127 | 98 | -> | Plus |
| arm_X | 17083025..17083853 | 128..950 | 99 | == | Plus |
