UFO12278.5prime Sequence
764 bp (670 high quality bases) assembled on 2012-09-06
> UFO12278.5prime
AGTCGACATGAAGCGAAGAAGTCAAACTAGAGCCGAACAAGCCGTTCCAC
CAGCTAAAACTACAAAGGAGAATAGTGGATCGCTCACAGTGTCCCAGCTC
AGCTCCGATGTTATTTGGCAGCTGGCATCGCAGTACTGGACGCCGGACAC
GAAAGCAGATCACCTGCCGTACAGTGCCAAGATCATCGAACGCATTTACA
ATGAGGAGATCGGTGATGGCGGTGGCCACAGTGCACGGAGGATAAACATG
CTGGAGTTCAGTCAGTATCTGGAGCAGTACCTGTGGCCACACTACCAACG
TGAAACCGCCACCCATGCCCACCTTATGTCCATCGTTATAATGGCCAACG
AGAAGTTCCGGGAGCGCGTCGAAGTTTGGACCGTGTTTGAAAAGCTCCCG
GATCAGTATCCAGCCTTCTTTCGCCACGTGCTAGAGAGCTGTTTGCCGAG
CAAAAAGGCAAAGGAGGCTAGTAGCACGCTAAGGGAGCGGACAGCGCTGT
TGATGTTCATTAACCACTGCTTTAACAGCATGGAGATAGAGCTGTGCAGA
GAACAGGCCAAACGACTAGTCTCCTTGTCCATGTGGCATTGCCTGCAGCC
TCGCCGTCGCGAACAAAGTCAATCTGTGCAAGCGACGTGCAAGAGACACG
GCCGAAACTACACTACTGTCGCACAGTCCCAGAGCGAGGCAGACTCAATT
CATGGTTCACATTACTAAAGCTGTGTGCGATGCGGTCACTGCTACCACGG
TCGTGCGGCGGCTC
UFO12278.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:07:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31368-RD | 4630 | CG31368-RD | 83..693 | 6..616 | 3055 | 100 | Plus |
| CG31368-RC | 4621 | CG31368-RC | 83..693 | 6..616 | 3055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:07:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11883046..11883530 | 119..603 | 2425 | 100 | Plus |
| 3R | 32079331 | 3R | 11882872..11882991 | 6..125 | 585 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:07:34 has no hits.
UFO12278.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:39 Download gff for
UFO12278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31368-RD | 72..695 | 1..624 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:44:52 Download gff for
UFO12278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31368-RC | 77..700 | 1..624 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:50:41 Download gff for
UFO12278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31368-RC | 77..700 | 1..624 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:50:41 Download gff for
UFO12278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11882866..11882987 | 1..121 | 98 | -> | Plus |
| 3R | 11883049..11883529 | 122..602 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:44:52 Download gff for
UFO12278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7708588..7708709 | 1..121 | 98 | -> | Plus |
| arm_3R | 7708771..7709251 | 122..602 | 100 | -> | Plus |
