UFO12279.5prime Sequence
1091 bp (974 high quality bases) assembled on 2012-09-06
> UFO12279.5prime
AGTCGACATGAGTGTTCGCCCCAATAACGCTGGCGATATGCTGCTCCACA
ATTCCGTAATTGGGGGCTACGATGAGTCAAAGTTTGCCGAAAAGATAACC
CACCTGACGCCCACCGAACAGGAAGCAGTGAAACGCTTCTGGAGGTCGCT
GGTTTTGCGAAGTCAACGCGCCTTCATTGAGGAAAATGCTCGTCCAATCG
CGTCCTCCGCGAATCCCGCTCCTGCGGGCATCACTCGCTCGGTGCGCAGC
TGCAACTGCTGTCCCTATGGCTACCACATCGACCTGGACTTTGTGCGCTA
CTGCGAGGCCCTCGCCCTTGAGAAGCCCAGCGAGGAGGAGCAGCGGCGGC
GGGATCGCAGAAGATCCCGAAAGTCCATGGAGTTTATGCTGGGATTTGAG
AGCCTCTTCGGCGGCGACTGGCAGGCGGAGTCCAGGGTGCAGGGAAAGCT
CAGCGAGACCTCACACGAAAGCGAACCAGATTCGCCACACCCCATTGGCG
GAGGAGGGTCGTTGCATATGTCGCAGTCGTACACCACCACTCCGTGCTAC
CGACCGCGTTCGTCATCCGTGCCGCGTTTCACCTACGGCAGTATACCGCC
TCGATCGGAGTCGCCCTTCGGCACCGCTTCCTCCACGTGCTCCTCGCTAC
GCGGCGGCGTGGAGAGCGATGCTGGTATCTACCATCAGCGTCATCGGCCG
GCGATCAGTCCGCCGGAGACGAGGGCCTTCCTCCACGAGGCGCTCGACGA
GGTGTGCAGCGATTTCGAGCGGACGCTGGAGCGGACTTCCGTAAAGCGAC
GCAAGTCTCCCTATGGAGCTGGATCCCTGTCCATGGATCGGAATAACAAC
AAACTTAGCCTGAGCATCAGCAATGCCATGCGCATTGAAGAGCTCAGAGT
CATCGCCTGGGCACAGCACGTGGGATCGGCACTTTGATGTGCAGATTCCT
GCATTGCGGCATCAATCGCCCACGGGCCCGCCGCGGCCCCTTTCTGCATC
ACACCCTTCTCTGCACAGCGACCAGTCGGGGAGGTCATATGAAGCTACTG
CAGCCACGGTGCGCAATGCAGTTCTCGTGTGACATCTGTAG
UFO12279.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:07:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10249-RD | 4880 | CG10249-RD | 362..1436 | 7..1061 | 4820 | 97.8 | Plus |
| CG10249-RG | 5340 | CG10249-RG | 960..1896 | 145..1061 | 4145 | 97.5 | Plus |
| CG10249-RC | 4551 | CG10249-RC | 215..1107 | 189..1061 | 3925 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:07:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14910228..14910718 | 941..456 | 2205 | 99 | Minus |
| 2R | 25286936 | 2R | 14911104..14911373 | 457..188 | 1350 | 100 | Minus |
| 2R | 25286936 | 2R | 14916872..14917011 | 146..7 | 685 | 99.3 | Minus |
| 2R | 25286936 | 2R | 14914848..14914893 | 188..143 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:07:37 has no hits.
UFO12279.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:40 Download gff for
UFO12279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10249-RD | 351..1402 | 1..1036 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:44:55 Download gff for
UFO12279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10249-RD | 355..1406 | 1..1036 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:50:43 Download gff for
UFO12279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10249-RD | 355..1406 | 1..1036 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:50:43 Download gff for
UFO12279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14910224..14910716 | 458..944 | 98 | <- | Minus |
| 2R | 14911104..14911372 | 189..457 | 100 | <- | Minus |
| 2R | 14914848..14914891 | 145..188 | 100 | <- | Minus |
| 2R | 14916874..14917013 | 1..144 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:44:55 Download gff for
UFO12279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10802353..10802396 | 145..188 | 100 | <- | Minus |
| arm_2R | 10804379..10804518 | 1..144 | 96 | | Minus |
| arm_2R | 10797729..10798221 | 458..944 | 98 | <- | Minus |
| arm_2R | 10798609..10798877 | 189..457 | 100 | <- | Minus |
