UFO12281.5prime Sequence
1112 bp (983 high quality bases) assembled on 2012-09-06
> UFO12281.5prime
AGTCGACATGGTGAAGAAGAAAATAGACAACCGGATACGCGTGATGATCG
AGAATGGGGTCAAGCTGGGCCACCGAACCATGTTCATCGTCATCGGGGAC
AAGGCGCGCGACCAGGTTCCCATTCTTTACGACATCCTGACCAAGTCGAC
GGTCAAGGCGCGACCCACGGTCCTGTGGTGCTACAAGAACAAGGATGAGG
CCATCTCCAATCATGGCAAAAAGCGAGCAAAGAAGATTGCTGTGGGCAAA
GTGGATGTCAATGAGGCGGACCTGTTCGATTCATTTCGAGTGGCCACCAC
CATTCACGGCAGATACTACTCCGAGACGCACGCAGTCCTCGGACGAACCT
ACGGCGTGTGTGTGCTCCAGGACTTCGAGGCCCTGACCCCCAATCTTTTG
GCTCGAACTGTGGAAACGGTTGAGGGCGGCGGTCTGATCATCCTGCTGCT
GAAGACACTGCAGTCGCTGAAACAGTTGTACACCATGAGCATGGATGTGC
ACAAGCGATTCCGCACAGAAGCCCATCAGACGGTGACCTGTCGATTCAAT
GAGCGACTCATTCTCTCCCTGGCGGACTGCAAGCGCTGTCTGGTGGTCAA
CGATGACCTCACCGTGCTGCCACTTAGCTCCAAGACCATCAACGTGGAGC
CAGTGAATCCCGCAGGCGCCGGTCGATCGCCCAACGAGGCTAGCCTCAAG
GAGCTGAAGGAGAGCCTGCTCACAGTTCAACCAGCAGGAGCTCTGGTTAA
TCTCTGCAAGACCTACGATCAGGCCAATGCCGTTGCCCAGTTCATTGAGG
CGCTGGTCGACAAGCAACTGAAGCCGCCCATGTCCTTAACAGCGGCTCGT
GTCGTGGTAAATCGGCCGCCCTGGGTCTGTCGATTGCCGCCGCCGTCGCC
TTTGGCTTTGTGAACATCTTACGTTACCTCACCGCATCCGGAGACTTATC
ACGCTTTTTGATTTGTGCTCAAGGCTTCGATGCTTGAGTACAGAGCATGC
TGACTACCCATTTATACGCTTCACATGCGACTACAAAAGGCGATAATAGA
ATAATATTTACGAGAGCAGCAGCCGACATTCAGTTACATAGCTCCAGGAT
CTCTATCTTGTT
UFO12281.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:07:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0020-RB | 3250 | CG1994-RB | 112..1215 | 7..1095 | 4900 | 97.5 | Plus |
| l(1)G0020-RA | 3246 | CG1994-RA | 112..1215 | 7..1095 | 4900 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:07:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8719456..8719903 | 658..211 | 2225 | 99.8 | Minus |
| X | 23542271 | X | 8719022..8719395 | 1024..659 | 1330 | 94.7 | Minus |
| X | 23542271 | X | 8719963..8720166 | 210..7 | 1020 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:07:40 has no hits.
UFO12281.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:41 Download gff for
UFO12281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0020-RA | 70..1163 | 1..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:44:57 Download gff for
UFO12281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0020-RA | 104..1197 | 1..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:50:45 Download gff for
UFO12281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0020-RA | 104..1197 | 1..1077 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:50:45 Download gff for
UFO12281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8719963..8720174 | 1..210 | 98 | | Minus |
| X | 8718962..8719395 | 659..1077 | 94 | <- | Minus |
| X | 8719456..8719903 | 211..658 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:44:57 Download gff for
UFO12281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8612995..8613428 | 659..1077 | 94 | <- | Minus |
| arm_X | 8613489..8613936 | 211..658 | 99 | <- | Minus |
| arm_X | 8613996..8614207 | 1..210 | 98 | | Minus |
