UFO12282.5prime Sequence
1110 bp (998 high quality bases) assembled on 2012-09-06
> UFO12282.5prime
AGTCGACATGGGGGAACGTTTCTATAGATGCTGGCCGTTTGATAGAAACG
GAAAAGTCGAAAACATATATGTAATGGAACATTCCGATCCCGTGCCTTAT
CAACAGCTATCGACATTATCGCCGACCACCGCACTATACTCGAACTTTAA
CAACTCTTTGGAAGCAGGAACCGCAGAAAGACTACGCCTTAATAAAACTG
GGTCACAGGTCCACAGCCTATATGTCGGCGACGGTCAAGTGCAAAATGCT
TCTGAACCCTTATCTTTTCCCAGCCACCTTAATCTGTACCAATATGTTCG
TACCCCGGCAAACTTCACTATTAACAGCCGCAACCGATATATTCCGTACT
ATAACAATCGTTCCTACTCTGCTTCAACAACTGGTTTCCCTATAGCCAGT
ACTCCGCTGATCAGCAGCCATGCGCACATCCAAGACCAACAAGGTGCAGC
GTCTTATCAAACGATTGTTCCGCTTTATCAGACCGCAAGCCACTGTGCGC
AGCAACATACAACATTGGCATCGGTAGCTCCAATCGTGGACAATTCATTC
GTTGAAAGCACCACTTGCCCCATGGCCGGCATCACCTCTCACAACATCAA
AATGAAAATGATTCCTCCCAATGTATTGTTGCCTTGCTCCAGGCCTACGA
CAACCGCGGTGACCATCCAAAGGTCAACCGGAGAAGACGGTGGAGATAAA
GAAGGTCATACTTTTGCTAAGATTACGGAGATGAGCGATGCTGTTACTTT
GCAGATCACCAACTTGGACTACTCGCTGGACGAATCACATATACGCAGCT
TTCTACTTAATCAGCTTAAGCCCATTACGCCAGTTGTGTCACTTGTCTTC
GAGGGAAGCTCCTATGCCAAAGTCACTGTTTCAGATCTTTATTTCGCAAA
GCAGTCGTCTCCAATTTGCACCGCAGAAGATTGAAACAAACGCATGCTGT
CAGTTATACTCGAGATTCCTCCCTCACCGAGTCAACACACTCCGCTGCCA
GTCGCATGACTTCTAAAGATGTCCCATTCACCCCTCCCATGTTAATAGTT
AAGGACTATTCAGTCCCGCTCCAACCTCTATCAGGTTTTCAATTGTACAA
ATGACGACAA
UFO12282.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:07:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17018-RC | 4395 | CG17018-RC | 178..1287 | 8..1101 | 4980 | 97.6 | Plus |
| CG17018-RE | 4815 | CG17018-RE | 596..1687 | 26..1101 | 4890 | 97.5 | Plus |
| CG17018-RF | 4749 | CG17018-RF | 552..1641 | 28..1101 | 4880 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:07:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22363426..22364294 | 24..892 | 4330 | 99.9 | Plus |
| 2L | 23513712 | 2L | 22365193..22365324 | 893..1018 | 330 | 93.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:07:18 has no hits.
UFO12282.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:35 Download gff for
UFO12282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17018-RC | 166..1283 | 1..1101 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:44:42 Download gff for
UFO12282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17018-RC | 170..1287 | 1..1101 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:50:34 Download gff for
UFO12282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17018-RC | 170..1287 | 1..1101 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:50:34 Download gff for
UFO12282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22363430..22364294 | 28..892 | 99 | -> | Plus |
| 2L | 22365193..22365324 | 893..1018 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:44:42 Download gff for
UFO12282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22363430..22364294 | 28..892 | 99 | -> | Plus |
| arm_2L | 22365193..22365324 | 893..1018 | 93 | -> | Plus |
