UFO12283.5prime Sequence
926 bp (764 high quality bases) assembled on 2012-09-06
> UFO12283.5prime
AGTCGACATGTCGGGGCAGGCGGAGCTCAAGGAGCTGGGCATGTTCGAGC
TGCGCCCGCTGATCACTAACATCAGCTGCAAGCTGTCCGCGGTGACAGCG
GGGCTGGACGAAAAGCGACAGTTCCTATGCCTCGTTTCTGAGGAAAACGA
GATCCTGCTGCGCTACATAAGCGCCGCCTCCGGCCAGGAGGTGGTCAAGA
TGATATCCTGGTTCCGCAACCGCGTCATCCACGACGTCTGCTTCGATCCG
GCGGGCGTTTGGCTGCTGGTGCTATGTTTCGACAACACACTGCACATCGT
GCCCGCCCTGGCGTTGGTGGACAAGGCCCATGGACTGTCCGCCTGCTCGC
TCTACAGCACCACCCAGGTCACCTCCTACATCATCCCCTTTGTGGGCCCC
CACGAGTGTCCCAACTCCAAAAAGTGCCCCAATCACTCCACCGGTCTGGA
AGAGTCCACGGCGGAGCCAATGGATCAGTTGGCTGAGAACCTAGAGCACG
CCAGGTTGCACGAAGGCGAAGAGGAGGAGCCTCTTGGCCACGACCTGCCC
GAGCACATGCTGGTGCGAAATAGCGGAACTGAGGATGCAGTGCAGCCACT
GCCGCAGCAGCAGCAGACGATCGATACCACCGGCATAGCCAGGTGATGGC
AGCCTCTTTCATGGCGTCCAGACCTGCCCCTATCCCTTGTCCGTCGTCTG
GTGGAAGACAACAGTTGAAAGAATAGGGCATTATCGGCTACTCGGATGGC
TCATCTGCTTTGTGGGCCTGAGTCCCAACTGCCCCATGATTGCGGGCACT
GCATCGAAAACGGATTTTGTAATGCGCCTTGGTTATCTGCAAGAAAAAGC
CTACGATGGTGTTTATGCTGCTGATACTTCCTCCTGAAGCAGCAGTTACA
AACTTTGCTGGAACAAAGCAATTCAA
UFO12283.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:07:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ca-RC | 6398 | CG31037-RC | 94..1013 | 4..917 | 4120 | 97.4 | Plus |
| ca-RA | 7026 | CG31037-RA | 521..1440 | 4..917 | 4120 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:07:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29807805..29808397 | 276..863 | 2405 | 97.1 | Plus |
| 3R | 32079331 | 3R | 29807331..29807604 | 4..277 | 1355 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:07:21 has no hits.
UFO12283.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:36 Download gff for
UFO12283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ca-RA | 81..1010 | 1..922 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:44:45 Download gff for
UFO12283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ca-RA | 337..1266 | 1..922 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:50:35 Download gff for
UFO12283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ca-RA | 518..1447 | 1..922 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:50:35 Download gff for
UFO12283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29807328..29807602 | 1..275 | 98 | -> | Plus |
| 3R | 29807805..29808406 | 276..873 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:44:45 Download gff for
UFO12283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25633050..25633324 | 1..275 | 98 | -> | Plus |
| arm_3R | 25633527..25634128 | 276..873 | 97 | -> | Plus |
