UFO12284.5prime Sequence
1095 bp (997 high quality bases) assembled on 2012-09-06
> UFO12284.5prime
AGTCGACATGCCAACCATGACACGGATGCATCGCCACTCCAGTTCCAGTG
CCGTGGTGGAGGAGTCGCGTGGCCGGCGCCGTGGAGTGGGCGTGCCAGGA
GTCGGAGACGCGAACAAGGAGAATTTCGGGGTGCACTTCATGAGCAGTCC
CTTCGGCAATGCCAGTTTGATTGCCCTGCAGGATTTGAGCAACGTGCACG
GAAAGAGTCCGCAGCGCAGGAGTTTCAGCGAGGGCAGTGGTCCGCGGCAG
GCCACGCCACAATTGGCGGCACTGCGCTGCTTGCCACGCACCACCGGTGG
TGCAGTTGCTCTGGAGGATTCTCAGCTCTCCTCATCGCGAATGGGCGATA
CCACACTGGACCGCATGCTGGATGCCATCATAGAGTCGGCCAGGAAGGAG
GTGAGGTGTACGAAGACACTGCCAGGCGCCGGCGCCACCACTTCGACCAC
CATTTTGGCGGATAATGCCGAGTGGAGCGAGACCAGTGTCCACGAAATGG
AGGTGCGCACGCCCACCCACTTGAAGCGGCAGCGGGTGGTGCGGCGCAAG
AACCCACACAAGACTACCACCATTAACCAAACGCAAAGTCACCAAGCCAA
GAAGTTGGAGCCACTGCAGTTGGTTCCCAGCACCAAACGCTGCCTGAGCT
TCTCATCCAGTTCCGCCTCGAGTGATTTGGACGAGGATGAGCAGCAGGTG
GCCAAGAGGAGTTCGCTGGCCTCCCCCACCACCACACCTCCCTCCCACTG
CACCACCACCACCAGCAGCATCAGCAGCAGCAGCAGCAGTAATGGTGGTG
CGGACATGGAGGCCAGTCAGCGGGGCAGCATCGATGTGAGCATCGCATTC
GATGCCAAGGAGCAGCAACTTAATGTACATGTGATTCGCTGTCCCGACTT
GCAGCGCTCCCATGCAGTGGAAACGGCAGCATCACGCCTACGTCAGGTGG
CCCTGTCCGGAGGAGCCAGCCACCCGGATACGTGCCACTCGTCGGGGGAG
CATGAGTTCCGGTACACGCCACCGCCGTCATCGCCCTCGGCCGCCGTACT
CGATCAGCGATTCAACTCGAATCAGTACGGAACCGCTGAACGATC
UFO12284.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:07:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PsGEF-RI | 6425 | CG43947-RI | 257..1334 | 5..1067 | 4960 | 98.2 | Plus |
| PsGEF-RH | 9240 | CG43947-RH | 257..1334 | 5..1067 | 4960 | 98.2 | Plus |
| PsGEF-RG | 9605 | CG43947-RG | 257..1334 | 5..1067 | 4960 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:07:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2384853..2385729 | 881..5 | 4385 | 100 | Minus |
| X | 23542271 | X | 2384377..2384516 | 1012..881 | 340 | 92.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:07:24 has no hits.
UFO12284.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:36 Download gff for
UFO12284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PsGEF-RC | 254..1334 | 1..1067 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:44:47 Download gff for
UFO12284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PsGEF-RG | 254..1334 | 1..1067 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:50:36 Download gff for
UFO12284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PsGEF-RG | 254..1334 | 1..1067 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:50:36 Download gff for
UFO12284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2384853..2385732 | 1..881 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:44:47 Download gff for
UFO12284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2278886..2279765 | 1..881 | 99 | | Minus |
