Clone UFO12286 Report

Search the DGRC for UFO12286

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:122
Well:86
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/Transcriptjar-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO12286.5prime Sequence

1106 bp (1002 high quality bases) assembled on 2012-09-06

> UFO12286.5prime
AGTCGACATGTTGGAGGACACCCAACTGGTGTGGGTGCGAGATGCCGCCG
AGGGCTATATACAGGGTAGGATCACCGAGATCGGCGCCAAGGAGTTCGAG
GTTACGCCCACCGATCGCAAGTATCCGAAGCGCACGTGTCACTTCGATGA
TATCCACTCTTCGTGCGATGGACCCCAGGATCACGATGACAACTGCGAAC
TCATGCTGCTCAACGAGGCCACATTTCTGGACAATTTGAAAACGCGTTAC
TACAAAGACAAGATCTACACATATGTGGCCAACATACTAATCGCCGTGAA
TCCGTATCGTGAGATAAAGGAGCTCTACGCACCCGATACCATCAAGAAGT
ACAATGGTCGTTCCCTGGGTGAACTGCCTCCTCATGTCTTTGCTATTGCG
GATAAAGCCATACGCGATATGCGGGTATACAAATTGTCCCAGTCGATCAT
CGTGTCCGGAGAGTCCGGCGCCGGCAAGACGGAGTCCACCAAATACCTGC
TCAAATACCTGTGCTATTCGCACGACAGTGCCGGTCCCATAGAGACCAAG
ATATTGGATGCCAATCCCGTGCTGGAGGCCTTTGGCAATGCCAAGACAAC
CAGAAACAACAACTCCTCGCGATTTGGAAAGTTCATTGAGGTGCACTACG
ATGCCAAGTGCCAGGTGGTCGGTGGTTACATATCGCACTACTTGCTGGAG
AAGAGTCGCATCTGTACGCAGAGCGCCGAGGAGCGAAACTATCATGTTTT
CTACATGCTCCTCGCCGGAGCTCCGCAGCAGCTGCGCGATAAGCTGAGCT
TGGGCAAGCCAGATGATTACAGGTATCTCTCTGGCTGCACACAGTACTTT
GCGAACGCCAAGACGGAGCAGCTAATACCGGGCTCACAAAAGTCGAAGAT
CCACCAGCAGTGGTCCACTTAAGGATCCGATTATCGATGATTATCAGCAC
TTCCACAACTTGACAGCCTGGTCGTCTGGACTCTCGGATACGAGAGCTGG
CATCTTATTCGCTGTTGCAGCTGTGCTCACTGGGCAACATGCTTCGAGAG
ATACCGATGATGTTGGCCGGTGCCTGCAAGGATCGAGCTCGACAGTGCTG
ACTTAC

UFO12286.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:07:55
Subject Length Description Subject Range Query Range Score Percent Strand
jar-RN 4505 CG5695-RN 344..1433 8..1081 4855 97.3 Plus
jar-RM 5025 CG5695-RM 811..1900 8..1081 4855 97.3 Plus
jar-RL 4361 CG5695-RL 102..1191 8..1081 4855 97.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:07:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24257648..24257911 823..560 1320 100 Minus
3R 32079331 3R 24259054..24259241 195..8 925 99.5 Minus
3R 32079331 3R 24257971..24258138 560..393 825 99.4 Minus
3R 32079331 3R 24258196..24258325 398..269 650 100 Minus
3R 32079331 3R 24257446..24257584 959..823 585 96.4 Minus
3R 32079331 3R 24258385..24258458 268..195 370 100 Minus
3L 28110227 3L 1326556..1326630 562..636 225 86.7 Plus
Blast to na_te.dros performed on 2014-11-28 18:07:54 has no hits.

UFO12286.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:45 Download gff for UFO12286.5prime
Subject Subject Range Query Range Percent Splice Strand
jar-RH 332..1414 1..1063 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:05 Download gff for UFO12286.5prime
Subject Subject Range Query Range Percent Splice Strand
jar-RK 334..1416 1..1063 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:50:56 Download gff for UFO12286.5prime
Subject Subject Range Query Range Percent Splice Strand
jar-RL 92..1174 1..1063 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:50:56 Download gff for UFO12286.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24257327..24257583 824..1063 91 <- Minus
3R 24257648..24257910 561..823 100 <- Minus
3R 24257971..24258132 399..560 100 <- Minus
3R 24258196..24258325 269..398 100 <- Minus
3R 24258385..24258458 195..268 100 <- Minus
3R 24259055..24259246 1..194 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:05 Download gff for UFO12286.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20083049..20083305 824..1063 91 <- Minus
arm_3R 20083370..20083632 561..823 100 <- Minus
arm_3R 20083693..20083854 399..560 100 <- Minus
arm_3R 20083918..20084047 269..398 100 <- Minus
arm_3R 20084107..20084180 195..268 100 <- Minus
arm_3R 20084777..20084968 1..194 97   Minus