UFO12288.5prime Sequence
1111 bp (981 high quality bases) assembled on 2012-09-06
> UFO12288.5prime
AGTCGACATGGCAACAACAACAACTACGCAGGCAGCAGGAGCTGCACCAG
CTCTCAATTTATTGCCCGCCAGCAATAACAATATAAATAATACACTGATC
AACAACAACAATAATAATAATAATACTAGTAACAGTAATAATAATAATAA
CAACGTTATAAGCCAGCCGATTAAAATACCGCTAACCGAGCGCTTCTCAT
CGCAAACATCGACGGGCTCGGCGGATAGCGGTGTAATTGTTTCCAGTGCA
TCGCAGCAGCAACTGCAGTTGCCACCACCACGCAGTAGCAGTGGATCGCT
GAGTCTGCCACAAGCGCCACCTGGCGGCAAGTGGCGGCAGAAGCAGCAGC
GCCAACAGTTGCTGCTCAGCCAGGACAGCGGCATCGAAAATGGTGTCACC
ACTCGTCCATCGAAAGCCAAGGACAACCAGGGTGCGGGAAAAGCCAGTCA
CAATGCCACAAGCTCGAAGGAGAGCGGCGCGCAGTCGAACAGCAGCAGCG
AGAGCCTGGGCAGCAATTGCTCCGAGGCCCAGGAGCAGCAGAGAGTAAGA
GCCTCCTCCGCTCTGGAGCTCAGCAGCGTGGACACTCCCGTGATCGTCGG
CGGTGTGGTCAGTGGAGGCAACAGCATCTTGCGCAGCCGCATTAAGTACA
AGAGTACGAACAGCACCGGAACCCAGGGATTCGATGTGGAGGATCGCATC
GATGAGGTGGATATCTGTGATGATGATGATGTCGACTGCGATGATCGCGG
ATCGGAGATCGAGGAGGAGGAGGAGGAGGAGGAGGACGACGGCGTCAATG
TGGACGACGATGTCGAGGAGGCCGACACCAGTCGGACAATCAGTCGGGTA
TTATAATAAACCTCAAGAGCCAAACCGAACAGAGGAGGAGGTCGATGAGT
GGATGCCAAGCCGAAGACCGACTTTTGCCACGGGATCAGCGGAACTCACA
GTTGCGCGGCATGGCACGTCGACGCGATGCCAGAGCTTACCACCGACGTC
ACCATATATTTCCCACCTGCTCAGATCAGCGCAAGATCCGCACATTGAAT
CGAAGCTGATCATCGCAAGGGATGGCCCTCAGACCCAATTATTATTTGGG
ACGATTCGGCG
UFO12288.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:07:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sgg-RQ | 4499 | CG5-RQ | 438..1550 | 8..1110 | 4940 | 97.3 | Plus |
| sgg-RP | 4750 | CG5-RP | 307..1419 | 8..1110 | 4940 | 97.3 | Plus |
| sgg-RD | 4805 | CG2621-RD | 585..1697 | 8..1110 | 4940 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:07:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2659350..2660412 | 8..1062 | 4585 | 97.4 | Plus |
Blast to na_te.dros performed 2014-11-28 18:07:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2848 | 11..515 | 159 | 54.6 | Plus |
UFO12288.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:45 Download gff for
UFO12288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgg-RD | 580..1659 | 8..1080 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:07 Download gff for
UFO12288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgg-RD | 585..1664 | 8..1080 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:50:58 Download gff for
UFO12288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgg-RD | 585..1664 | 8..1080 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:50:58 Download gff for
UFO12288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2659350..2660415 | 8..1064 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:07 Download gff for
UFO12288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2553383..2554448 | 8..1064 | 98 | -> | Plus |
