UFO12289.5prime Sequence
1116 bp (989 high quality bases) assembled on 2012-09-06
> UFO12289.5prime
AGTCGACATGTGGGCGGCAAAATATGTTTTATGCGCGCTAGCATGCGTTG
CATTTGCTTCAGCTTCTCCAAGCTCCGAGCGAAAAAGGAAAAATGTCATG
AATATTCCAGAGGATCCTAAAGTTTCTGACTCCTTGGCTGCTTCTTTGGA
CATGAGCTGCTCGTCGGCCAAAATCCTTCCGCCGGAGATTAATCATGGTA
GGGTGTCCGTTTTCGATCGCCGCCGGAGGGGAAAGAAGGTCTTCCTAGTG
GCCTTTTTCGTATGCGATGATAACTACGACTTTGAAAACGGAATCTCAGA
AATGTTTTGCTCGAACCAGAAATGGGTGGATGAAATACCCACCTGCATTC
CCCAATTGAATTTTGAAGAACACGACGAGAAAGTAGGTTACGATTTGGAA
GATTATTCCGACGAAACTGTGCCCAACGATTACGTCGAGAACAGTGATAT
TGATGAGGATGATGATGAAGAGGTTAGTGAAAGGGAACCACCACCGCCAC
CACCACCACCGGTAGTGGATGGAGCCGATTCCAAGCCTGAACCACAAATA
GTTATCGAAATTAATGATGATCATGCAAATGAAGTCGTTGAATCAGAACC
TGCTTTAGCGGAGACTGAAACTGAAAATGAGGTCCTTGAAAACGAAACTC
CCCTGAAAGCGGAAGTCCAAACTGATGTACTCAACTCCAGCAATGCATCT
GTTAAGGTCACCAATGATCCTTATGAGCCAACATTCTTGGATAACAATTG
TGGCGAAGACAATGGAGGCTGTGCGCACATTTGCAAGCGATTGCTTTATC
CAGATGAAAACCAGCCCATCAATAAGTGCGATTGTCGAGAGGGTTATACC
CTGATCCTAACGATTATGCTAGCTGCCTCGATATCGACGAATGCCTGGAA
TCGAATGGTGTTGTTCGGAAATTTGCGAAAACCTTCCAGGAGAATATAAA
TGTAGCTGCCAGAGGGTTATTACTAGACGAGTCAGAAAGAGTTGTGTGAC
ATAATGATGTGCGATCCGAGCTGTCATCGATGCAGGTGCTGCAGATCTGC
AAGTCAATCGCTGGTGAACGCTTGAGAAATTCGAAATCCGGAGTCTGGAA
TCCATGAAAACCGAGT
UFO12289.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:08:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| frac-RG | 4496 | CG7526-RG | 101..1133 | 8..1030 | 4915 | 99 | Plus |
| frac-RF | 4549 | CG7526-RF | 154..1186 | 8..1030 | 4915 | 99 | Plus |
| frac-RC | 5069 | CG7526-RC | 101..1133 | 8..1030 | 4915 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:08:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7564166..7564986 | 61..880 | 4055 | 99.9 | Plus |
| 3L | 28110227 | 3L | 7565048..7565169 | 880..997 | 410 | 96.7 | Plus |
| 3L | 28110227 | 3L | 7563079..7563133 | 8..62 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:08:01 has no hits.
UFO12289.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:46 Download gff for
UFO12289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7526-RC | 94..1146 | 1..1040 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:10 Download gff for
UFO12289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| frac-RC | 95..1147 | 1..1040 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:51:00 Download gff for
UFO12289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| frac-RC | 95..1147 | 1..1040 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:51:00 Download gff for
UFO12289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7563073..7563133 | 1..62 | 93 | -> | Plus |
| 3L | 7564168..7564986 | 63..880 | 99 | -> | Plus |
| 3L | 7565049..7565171 | 881..998 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:10 Download gff for
UFO12289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7556173..7556233 | 1..62 | 93 | -> | Plus |
| arm_3L | 7557268..7558086 | 63..880 | 99 | -> | Plus |
| arm_3L | 7558149..7558271 | 881..998 | 95 | -> | Plus |
