UFO12290.5prime Sequence
913 bp (754 high quality bases) assembled on 2012-09-06
> UFO12290.5prime
AGTCGACATGCGATTTGCCTTCGATTCTAATCATTCGCAATCGGGGGCGC
CATTCAAAGGCAGCAGGTGTTTCTTTAATTGTCAATGCATCTGCTGTCGC
CAAGGATGCTGCGTTGTGGTTGTAAAGTGCTGTTGCTGCTTTAACTTAAA
CTGCTGCAACAGCCTTGGCTCCCGGAAGTCATTTCCACAACCCGCTGCAA
TGCGTAAAAAAGTTGCTGACCTCGAAGTCCTTAGAGTATCAAGGTTTGTG
GCGGTTATTTTAGTGCTGGCTCGGTGGGTTACTGCGGTAGCGACACTCCT
GACAAGCTGCATACTCCTAGACATATTTTCCGTGCCTGGCCAGTCTGGAG
TTGCAGATAGAAGCCAAGCCAGCAGTAGGACAGTGCACGTCTCGGTTCCT
ACCACACCTAATGAAACTCCCAGTAGCACTTCGGAGACGAAGCTAAAGTT
GCTTTATGGGTATACATCGTATGACATAAATAACGACCAACAGGTAAAGT
CCAACAATTTATGTAGAGTGCTTTGTAAAAGTCGCAATCGTAAACGACAG
CGAAGGAGGCGACGCCGACGCAATCACAGACGACGCAGGCACAGATATAC
TAAGCGACTTCATCATCTAATGCAAGATAATATGAGCGGCTTTGAGCAAA
GACTTAATTTTAGCGATGCCAAATGCCAGTCTTTGGAGACAAATTACGGA
TATTATATCAGGACATATATAAAACATGTCCTGGGATACCTGCGACTGTA
GTATGCATACAAACACATGTCATGCCCGTACATAATGAGACAAATAGCAT
GACAGGTGCGCACAACAAACACAAACAACTCAATCAATACAATGCTATGA
CTATGCCACTATGACAGACTGGTACGGCTGGACACTAGTATGTAAGGCTA
TTATAGACATGTA
UFO12290.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:08:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Actbeta-RA | 3671 | CG11062-RA | 331..1023 | 8..700 | 3465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:08:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 1082434..1083126 | 700..8 | 3465 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 18:08:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tabor | 7345 | Tabor TABOR 7345bp | 2367..2442 | 796..871 | 109 | 63.6 | Plus |
UFO12290.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:47 Download gff for
UFO12290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Actbeta-RA | 320..1031 | 1..714 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:12 Download gff for
UFO12290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Actbeta-RA | 324..1035 | 1..714 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:51:01 Download gff for
UFO12290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Actbeta-RA | 324..1035 | 1..714 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:51:01 Download gff for
UFO12290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 1082422..1083133 | 1..714 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:12 Download gff for
UFO12290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 1103048..1103759 | 1..714 | 98 | | Minus |
