UFO12291.5prime Sequence
1142 bp (1017 high quality bases) assembled on 2012-09-06
> UFO12291.5prime
AGTCGACATGGAAAAGCAGGAGGTCCTGGAATACGTGGCCAAGGTGGTCA
GGGCCCTAATCACGTCAGCTAAGCCGCCGGTTACGCTGCGGTCCATCGTC
GCAGATTACATGGAGATTGAGGGTGAGCCGATACCCTTTCGCAGGCTGGG
CTACTCGAATGACCAAGAGCTGCTTAAGGATTCGAATCAATTCAACTTTC
ACCAAAGCGGTAATCAGGTGTTCATCACAGCGAAGTATAACGCTAACACA
GAACATATTGTGCGTATGGTACGTCAGCAGAAGACCAGCAAGTCCACAAG
CTTATCGAAGCCCACTCCAATTGCCCAGAAGCCCAAGCCAATTGCCCAGA
AGCACACTCACGGCAATAAGTACCACTACCAGCAACGGAATAAGCAGCCG
AATCATCAGCCGGATCAAGAAATAGGAAGAGCAGCTAAGTGTGAGAATCA
GGCTATAGCCGAGCATAAACAAGATCTAACGGGCATCATAACCCAAGAGC
TGTTTGAAAGTTTCAATAATATTCAAGGTCCGTTTTCGGAAAACCTGCAG
GTTTTCAACAAAAATCCAGAATATATCACAAGGCGAAAGAAAGAGCTTAA
GAAAGAAGACGATCTAGATCGTGGTCAAATAACGAAGGAAGTCGCTAGGG
AAAAACAGAAGGAAAAAGAAACCCGCGATCGGGCTGTGACGGAAACGATC
TTCGTAACAATTGAGAACAAAAAGGCACCAGTCATGAATGGACATGGACC
AAAGGCACGTTAAAGTGGCTAACGGACAAGACAAACACAATGACGGCAAA
CCTCCGCTGCGTGCCATACTGGGCAACAGTGCTTCGCAGCGCCAGCAAGA
TACAAGCACCGTCTATCACAGCCCTGAATCCTCATTCAAGCGGCCACGTC
ATCCGCGAGTATGTACCCTGATCACCAGCGCACCACGGCGTCTCTGTGAT
CACAGATTGAAAGTAACGCCGCAATCGGATGCACCCACGCAGCGGTAGCG
CCCATCACGCGCAGCTTCGCGATACGCTCAAACGACACCGCCGCTAAGCG
ACGTACAAGAAGATTTCCCACGAAGTTCAGTGAAACAGCATGTCGTACAT
CGAAGTAGTCCACTTAATCGATCCCTCCTTGTATCCGGTTCT
UFO12291.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:08:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8920-RD | 3272 | CG8920-RD | 177..1269 | 8..1088 | 5035 | 98.2 | Plus |
| CG8920-RB | 4005 | CG8920-RB | 177..1269 | 8..1088 | 5035 | 98.2 | Plus |
| CG8920-RF | 3753 | CG8920-RF | 135..1017 | 218..1088 | 3985 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:08:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20321675..20322473 | 215..1010 | 3735 | 99.2 | Plus |
| 2R | 25286936 | 2R | 20319813..20320024 | 8..219 | 1060 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:08:07 has no hits.
UFO12291.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:48 Download gff for
UFO12291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8920-RD | 144..1231 | 1..1079 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:13 Download gff for
UFO12291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8920-RB | 171..1258 | 1..1079 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:51:03 Download gff for
UFO12291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8920-RB | 171..1258 | 1..1079 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:51:03 Download gff for
UFO12291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20319807..20320022 | 1..217 | 98 | -> | Plus |
| 2R | 20321678..20322549 | 218..1079 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:13 Download gff for
UFO12291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16207312..16207527 | 1..217 | 98 | -> | Plus |
| arm_2R | 16209183..16210054 | 218..1079 | 97 | | Plus |
