UFO12292.5prime Sequence
978 bp (764 high quality bases) assembled on 2012-09-06
> UFO12292.5prime
AGTCGACATGTTTGGTTTATGCGAAAAGTTGATGACACATTTCGCTGTCA
TTTTGACCGCATTTTCCTTCTCCCAGCCGCTGTTGTTGTTGCTGATTTGC
GGGCCGCATGGCGGCACCTTCCCCTCGACATCCATCCACTGGGCGGAGGC
CTCGGCGGCGGATGAAGCTGTCGGCAAGTGGGCCACCCAATTTGGCGACG
AGCTGTTCGCGCTGGCGCAGAAGATCACCAAGTCGCAGGAGATCAAGGAG
AAGTACAAGGAGTACAATGCCCGCGTGGAGCTGAAGAACGGCACCGAACT
GATTAAGTCAATAACGAAAAATGTGGGCAGAATGCTGGCGAGGAAAATGG
ACGCGGTGCGGTGCATCCAGGAGCGTGCGGAATATGTGAACGAGAACTTT
GAGTTTAATCTCACCTATGCGCTTCAGAACTTCACCTACTTTTCTAGCAA
GTATTCGACCTTTAATGGAAACAGTTCCGAGGAGCTGGAACCTAATGAGG
CTGAGTTCGCCTGGATGTATCGGAATATGGAGTTGAATCCGGACACACAC
TTCTACAATACGCCAGTGGACACGGAACACAGTTCGGTGCACGTGCCATC
GAATATATGGGATCGATCGGAACGTGTCCTGAAGACCATAATGTGGTCCG
AGCATCTGGACGAGGTGTTCCGGCAGAATTACCAATCCGATCCGGCCTTG
TCGTGGCAGTACTTTGGTCGTCGGATCTCGCATATCCGCTGCCATGATGT
ACAACAATCGGTGTGCGCCTTGTGCGAGAGCTGTCTGACGCCTGTCAAGC
TGCTCTGTGACTCGTCATGCGCTCGACTGGCAGTACATCCACTCAACTCC
ACTGTCTCCATCGGACAGGGATGCTAACTGTCATGACCCGCAGGACCAAC
AAGTCACGACAGTGCACGAGTCATCCTGCAAACGCTCATGGGAATCAAGC
CTGCATCAGACGCTTTGCCAGAGTGACC
UFO12292.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:08:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42817-RB | 5790 | CG42817-RB | 600..1309 | 8..717 | 3550 | 100 | Plus |
| CG42817-RA | 4919 | CG42817-RA | 600..1309 | 8..717 | 3550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:08:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16235620..16236168 | 169..717 | 2745 | 100 | Plus |
| 2L | 23513712 | 2L | 16232074..16232234 | 8..168 | 805 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:08:10 has no hits.
UFO12292.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:49 Download gff for
UFO12292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42817-RA | 592..1317 | 1..730 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:14 Download gff for
UFO12292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42817-RA | 594..1319 | 1..730 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:51:06 Download gff for
UFO12292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42817-RA | 594..1319 | 1..730 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:51:06 Download gff for
UFO12292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16232068..16232234 | 1..168 | 97 | -> | Plus |
| 2L | 16235620..16236184 | 169..729 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:14 Download gff for
UFO12292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16232068..16232234 | 1..168 | 97 | -> | Plus |
| arm_2L | 16235620..16236184 | 169..729 | 98 | <- | Plus |
