UFO12294.5prime Sequence
936 bp (935 high quality bases) assembled on 2012-09-06
> UFO12294.5prime
AGTCGACATGGGTCGCAGCAACTTCAGTTCGCATCACCAGCAGACTCATG
TGAGGCGCCACCGCAATGCTGGCGGTGCCACATCAAAATCACCAAACGCA
GCCAAAACTTCGCCAACAATGACGGACTACCTGTCGCTGCACTCGCGACT
CGCCCAGGTGGGCCAGGAGCACCTGCTCAAGTTCTGGCCGGAACTAACGA
ATGACGAACGCATCGACCTGGTGCGGGACATCGAGGAGCTGAATCTGGAC
GAGATCAAGCTGTATTTCGACCGCGCCACGGTCTCAATGAACGAGAATGG
CATCAAGCTGGACGATCGCCTGCAGCCGCTGCCCGAGGGCAAGCTAATCT
CCATTGCCAGGGCGCCGCTGGAGAAATTGGACGCCTACCGAGACGAGGGT
CTCCTCCAGATCAGCAACGGACATGTCGCTGTGCTGCTTATGGCAGGCGG
ACAAGGCACACGACTTGGCTTCGATCATCCCAAGGGAATGTACGATGTGG
GACTGCAGTCTCGAAAGACCCTGTTCCGCATTCAGGCCGAGCGAATCCTG
AAGCTGGAGGAGCTCGCCCAAGAGGCGAATGGAAAACGTGGACACATCAC
TTGGTACATCATGACGTCGGAGCACACGGTGCAACCCACATACGACTACT
TTGTGGCCAATAACTTCTTTGGCCTGAAGGCGGAGAACGTACTGTTGTTC
GAGCAGGGATCACTGCCGTGCTTTGAATACGATGGACGCATCATTCTGGA
CGAAAAGCATCGGGTGGCGCGTGCGCCGGACGGCAACGGAGGAATCTATC
GGGCTATGAAGCGCCAGGGGATTCTGGACGATATTGCAGAAGCGTGGTGT
CTTATATCTGCATGCCCATAGCGTGACACATCTTGATCAAGTGGCCGAAT
CCCGTTTTTATCGGCTACTGCGGTGCAAGAGATGCC
UFO12294.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:07:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mmy-RA | 2030 | CG9535-RA | 214..1138 | 8..932 | 4460 | 99.1 | Plus |
| mmy-RD | 2064 | CG9535-RD | 214..1119 | 8..932 | 4165 | 97.1 | Plus |
| mmy-RB | 1921 | CG9535-RB | 113..976 | 69..932 | 4155 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:07:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6469492..6469961 | 922..454 | 2120 | 97.7 | Minus |
| 2L | 23513712 | 2L | 6471327..6471715 | 456..68 | 1945 | 100 | Minus |
| 2L | 23513712 | 2L | 6473631..6473691 | 68..8 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:07:43 has no hits.
UFO12294.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:41 Download gff for
UFO12294.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mmy-RA | 222..1157 | 1..936 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:44:58 Download gff for
UFO12294.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mmy-RA | 207..1142 | 1..936 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:50:48 Download gff for
UFO12294.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mmy-RA | 207..1142 | 1..936 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:50:48 Download gff for
UFO12294.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6469478..6469959 | 456..936 | 97 | <- | Minus |
| 2L | 6471328..6471714 | 69..455 | 100 | <- | Minus |
| 2L | 6473631..6473698 | 1..68 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:44:58 Download gff for
UFO12294.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6469478..6469959 | 456..936 | 97 | <- | Minus |
| arm_2L | 6471328..6471714 | 69..455 | 100 | <- | Minus |
| arm_2L | 6473631..6473698 | 1..68 | 95 | | Minus |
