UFO12295.5prime Sequence
1101 bp (989 high quality bases) assembled on 2012-09-06
> UFO12295.5prime
AGTCGACATGGCTGGAAGAATTACAATCAACGGCACCAGCCACGAAGTCA
ACCTGTCTGCCCTGCCGGCGGATATCTCGCTGAACACTTTCATCCGAGAG
TATGCCGGATTAACGGGCACGAAGTTCATGTGCCAGGAGGGCGGATGCGG
CGTCTGCGTCTGCACCCTGACTGGGATTCATCCGGAGACCGGAGAGCTGC
GCACCTGGGCGGTCAACTCGTGCCTCACGCTGCTGAATACGTGCTTGGGC
CTGGAGGTGACCACTTCGGAGGGATTGGGCAACAAGCGGGTCGGCTACCA
TGCCATCCAGCAGCGACTGGCCAAGATGAACGGCACCCAGTGCGGCTACT
GCTCGCCGGGAATCGTGATGAACATGTACGGCCTGCTGAAGTCCAAGGGC
GGCAAGGTCACAATGGAGGAGGTGGAGAACTCCTTTGGAGGCAACATCTG
TCGCTGCACTGGCTATCGTCCCATTCTTGACGCCATGAAATCCTTTGCCG
TGGACAGCAACATCCAGGTACCAGCTGAGTGCATTGACATTGAAGACCTG
AGCACCAAAAAGTGTCCCAAGACCGGCCAAACCTGCTCCGGCAGCTGCAA
GAAGCAGCAGCCCAAGGGCAGCCAACTGTATCCGGATGGCAGCCGCTGGA
GTTGGCCAGTGAGTCTGGGTGACCTCTTTGCCGCTCTGCAGGGAGCAGTC
AAAGAGAAGCTGCCCTACATGCTGGTGGCTGGAAATACGGCCCACGGCGT
CTACAGACGTAGTCCGGACATAAAGGCATTCATCGATGTTTCCGGCTTGG
CGGAGCTCAAGGGTCATAAGCTGAGCGCAGATAACTCATCCCTAACTCTC
GGTGAAATCTGAGTCTCAGTGAAACCATGGAGCTGTGTCGCCAGTTGGAG
AACACGAAGGCTTCGAGTATTTGTCTCAGTGTGCAACACCTCGATGATCG
CTATGTCCAGTGCGCAATGCTGCACTGGCGGGCATCTGTCATCAAGCATG
CCCACCGAGTTCCCCCTCGATGTGTTCATCGTCTGGAGCCCTAAATGCTC
AGTGATGTCCAGGAAGCCGGTGACAAGCAGCGAAACTGTCAGCCTGCAGC
T
UFO12295.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:07:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AOX1-RA | 4228 | CG18522-RA | 218..1324 | 8..1096 | 4935 | 97.6 | Plus |
| AOX3-RA | 4163 | CG6045-RA | 330..837 | 61..586 | 725 | 76.9 | Plus |
| AOX4-RA | 3832 | CG18516-RA | 237..545 | 201..509 | 635 | 81.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:07:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15535673..15536558 | 929..46 | 4330 | 99.8 | Minus |
| 3R | 32079331 | 3R | 15546304..15546670 | 586..220 | 650 | 78.5 | Minus |
| 3R | 32079331 | 3R | 15552140..15552356 | 509..293 | 605 | 85.3 | Minus |
| 3R | 32079331 | 3R | 15541759..15542001 | 511..269 | 420 | 78.2 | Minus |
| 3R | 32079331 | 3R | 15546768..15546870 | 163..61 | 230 | 81.6 | Minus |
| 3R | 32079331 | 3R | 15537036..15537075 | 47..8 | 200 | 100 | Minus |
| 3R | 32079331 | 3R | 13033879..13033951 | 308..380 | 185 | 83.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:07:46 has no hits.
UFO12295.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:42 Download gff for
UFO12295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18522-RA | 209..1327 | 1..1101 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:00 Download gff for
UFO12295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18522-RA | 213..1331 | 1..1101 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:50:49 Download gff for
UFO12295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AOX1-RA | 213..1331 | 1..1101 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:50:49 Download gff for
UFO12295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15537036..15537078 | 1..47 | 91 | | Minus |
| 3R | 15535628..15536556 | 48..968 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:00 Download gff for
UFO12295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11361350..11362278 | 48..968 | 99 | <- | Minus |
| arm_3R | 11362758..11362800 | 1..47 | 91 | | Minus |
