UFO12296.5prime Sequence
1080 bp (870 high quality bases) assembled on 2012-09-06
> UFO12296.5prime
AATCGACATGGACCTGAACACTCTGCTGCAGCGCGCCCAGAACCTGAACA
ATGACGCGAAGGCAGAGTGCGAGCTGCCCGCCGTGGAGCGGACGCTTCAG
CAGGTCCTGCGGGCCACCACGGAGCTCCACTCCCGCGTCACCCAAACCGG
CTGCGAAGAGATCCAGGCTCACATACTGCTGGGCTCCAAGGGCGTGGACC
TGCCCAAGCTGAACCAGAAGCTGGAGGCGCTGAATGCCCGGAAAACCTTC
GAGCCGCTAGACGTAAAGGCGGACACGGATGTGCGCACATTCCTGAAGAA
CGAACGCGAGAATGCAATTCTCTCGGTGATCGAGGACACGAAAAAGAATA
TCAGCGACTCTGCGAACAAGCAGAGGTGGGCCAGTATGAACAAAGTATGG
AACGAGGAGAAGACCCGCCTGCTGGACGCCTTAATTGCGCCGTCACAGAA
CTTTATCGACCTACAACGGCTGCCGGAACCCACCATCGTAAATCCGCTTT
GTCAGCCACGTTCCTGCCTCGATCCGCTGGAACTAGTGTATGCGCAAGAG
TTGCGGCATTACAATGAACTGCTGCTTAAGAGCAGCCATCGACCCAATCT
CGTCCAAAAGTTCGCTCATCTGTCCCAGAGCTTCGGAGATTGCCGGCTTA
CGGACATGTGGACCCTGCTGGCTTGCGTCACCCAAATCAGCGAGCCGCTG
CGCAGTGACCCCATCAAGAGCCGACAGCAAAGACCGGAGTTTGTTACCTA
TGCTAAATCGTACCTAGAACGGCGCTATCGTGTGTTCATGTGCTCCCAAG
TCGGTGGATCCTATGCCACACAGCTATCAGTTGGTTGTGGCCTATGTAAA
CCACCGGTTCAGAGCACAGCAGACCATCGGACTGTGACACCGTCCGCGAA
ATACCCTTATGTCCGCTGGTTTACTACGGATTGCGCTGCGAACGGTAAGG
TGGCGGTTGAGTACTGCGACTGAGCAGAGCGACGACGAGTTCGCCAGTTC
CTGCAGATCGCATGCGCAACCGATTCAAAACAAAACAGCTGCACTGCTAC
GCAGAAAACGCATCACGATGCATAAGAGCG
UFO12296.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:07:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup93-2-RA | 2497 | CG7262-RA | 86..1046 | 8..962 | 4595 | 99 | Plus |
| Nup93-1-RA | 2786 | CG11092-RA | 195..436 | 101..342 | 370 | 76.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:07:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14897216..14897834 | 962..350 | 2795 | 97.9 | Minus |
| 3R | 32079331 | 3R | 14897888..14898068 | 349..169 | 890 | 99.4 | Minus |
| 3R | 32079331 | 3R | 14898127..14898287 | 168..8 | 790 | 99.4 | Minus |
| X | 23542271 | X | 13823152..13823324 | 170..342 | 295 | 78 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:07:49 has no hits.
UFO12296.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:43 Download gff for
UFO12296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7262-RA | 78..1052 | 1..973 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:45:02 Download gff for
UFO12296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup93-2-RA | 78..1052 | 1..973 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:50:52 Download gff for
UFO12296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup93-2-RA | 82..1056 | 1..973 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:50:52 Download gff for
UFO12296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14897216..14897834 | 350..962 | 98 | <- | Minus |
| 3R | 14897888..14898068 | 169..349 | 99 | <- | Minus |
| 3R | 14898127..14898290 | 1..168 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:45:02 Download gff for
UFO12296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10722938..10723556 | 350..962 | 98 | <- | Minus |
| arm_3R | 10723610..10723790 | 169..349 | 99 | <- | Minus |
| arm_3R | 10723849..10724012 | 1..168 | 97 | | Minus |
