UFO12301.5prime Sequence
978 bp (842 high quality bases) assembled on 2012-10-16
> UFO12301.5prime
AGTCGACATGGAGAGTGAGCAGCCAGCGGCTGTAAAGGCTTCAGCTCCAA
TTGAAGAGCCACAATCCACCGAAACAGCTGTTGAATTGGGGAAACATAGC
ACCTTGAAGGCAGACTTATCAATAGATAAGTTGGAAACAGCGACAACAGA
AGCTACGAATGCCGTAGTAGAACCAGTAGAAATGGAGCAGCAGGTGGAAA
ATGAACTGGTAAATGAGTCAACACAAGCCATGACATCGACCACAACCCAG
GAAAAGGTGGTGGGTTCAGTGAATAATCTTGTAGAGGAGCAACAGTGTGT
GGAAATGGAATTCGAAACATCATCAGATCTCGTGGTCCAGGGAAGTCCAT
CGGAAGAATCCAAAAAAGTTGCCTCTGACGCTTCTGCTACTGTGACCGCA
CCTCAAGTTCAGCCCGCTCCACATGTTGATTCAAGCCCTCAAGCAAGTGG
CCTCAGTCTGTTGGCTGCCTACAGCTCTGATGACTCGGATGATGAGAAAG
TCACTCCAGTGCAGAACGGCGACAACGATGTGATTGAAGTTCCAGTTACG
GACCCCGCATCCTCCACCACCGCATATCGTCCAGTTGTAGCTGTGAGCTC
GGATGACGAGAGCTCAAAGAGCAGCAGCAGCAGCAGTGACTCAGACTCCG
ATTCCGAAGGAGATACCTCACCGTACTTCGGAAGAGATTGACAAAAGATC
ACACCGTGGATTGTGACGAGGATGACGAGGACTTTGATGAGATGGGGCTA
CAGGAGATCGGTCTCGTCGTCGCAGCCCCGAAGTACGAGGAGAAATGCTC
CTTGATGACCTTCGCCTATTCATCAGCTAGAGATACTGTACCCGAGATGA
TGCGTGACTTGCAAAGTCAGTCATCGTGATCAGCTTGTTTGTTCGTGCTG
CGATCATGCTATCGATCTCGAAACGTTTGTCCTGAAGGTTCCAGGTCTGC
ACGGATGCAATGATCATCGTCGACTGAG
UFO12301.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:11:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10341-RA | 1873 | CG10341-RA | 121..1062 | 7..921 | 4065 | 97.1 | Plus |
| CG10341-RC | 1870 | CG10341-RC | 121..1059 | 7..921 | 4010 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:11:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18699033..18699742 | 147..846 | 3075 | 98.2 | Plus |
| 2L | 23513712 | 2L | 18698834..18698976 | 7..149 | 715 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:11:34 has no hits.
UFO12301.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:31:54 Download gff for
UFO12301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10341-RB | 65..985 | 1..901 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:47:28 Download gff for
UFO12301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10341-RA | 115..1037 | 1..901 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:53:02 Download gff for
UFO12301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10341-RA | 115..1037 | 1..901 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:53:02 Download gff for
UFO12301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18698828..18698976 | 1..149 | 97 | -> | Plus |
| 2L | 18699036..18699809 | 150..901 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:47:28 Download gff for
UFO12301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18698828..18698976 | 1..149 | 97 | -> | Plus |
| arm_2L | 18699036..18699809 | 150..901 | 97 | | Plus |
