UFO12302.5prime Sequence
961 bp (827 high quality bases) assembled on 2012-10-16
> UFO12302.5prime
AGTCGACATGGACAAGTTTCTGTTGCGCAATCCCACGTGGAAGACGAAGA
CGTACGGATCGGTCGTGGCCAGTTCCGCCGCAGCTGCCAAGAAAACAGCG
GCGTCATCGACCCGCCGACCGTTGCACGATTCAAATCTGGGCGACTTCAG
GTCCAAAGCAGCGGCACCGTCTCCCAAATCTCTATCCCAGGCCCCGGCAG
ATGACCAGGCGGCCAGGGATCGGCTGATGCTCAAGCCGGCATTAGCCGTC
TCCAAAGCGATCAGCCAGCACCGCTCCGAGTTCCACCAGGACGAGAACGA
GGCGGGAGCAGAAGGATCTGCAGCAAAACCAGATCCACCCATCGGAGCAG
CCACGCCAACCAGGCAGGAAGGACACTGGGCCCGACTGCAGCAAGATCTC
AACAGCCCCAACGCTGCACTCCGATTACGCGCCATTCGTGCATTAAAAAG
CCCCACCAAGTCGGCATACAATACCTTCGATGTGCCTTTAGCCGAACAAA
GCATCATCACGATGGAAGACGCAATCCCCAGGAGCCGCCCTCCCTCCCCG
AGTTGCTCAAGGACATAGTCGTATATGTGGAGGTGCGAACTGGAAACGAC
AATCGCTCTGAGGGCGTAAAATCAATTATTGCCAAGATGGGAGCCCAGGT
CAAAGATCGCCTAACGCGAACCACCACACACGTTGTCTTCAAGGATGGCC
TGCTCTCACCTATAAAAGGCCACCGAGTGAATATACCAGTCGTTTCATTC
TGTGATTGAAGCTTGCAAGGTGCAGCTGAATATGCGATCCAGCATTTCAT
CAGCAATATACGCATGTACGAGTATCCCGAGCTCTTGCAAATGCCGCGCG
TAGTCATGCAGCGACTCGAGTTGATCAACGACCCGCAAACGCAGACACCA
CATCTCAAGACACGAGCAGATCGACTACACGAGCTGACCGGATTCCACAC
ACCACCAGAAT
UFO12302.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:11:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MCPH1-RD | 3360 | CG42572-RD | 145..1054 | 7..892 | 3995 | 97.3 | Plus |
| MCPH1-RB | 2872 | CG42572-RB | 145..1054 | 7..892 | 3995 | 97.3 | Plus |
| MCPH1-RC | 3149 | CG42572-RC | 126..843 | 199..892 | 3035 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:11:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11903165..11903413 | 447..199 | 1245 | 100 | Minus |
| 2R | 25286936 | 2R | 11902619..11902840 | 668..448 | 1060 | 99.5 | Minus |
| 2R | 25286936 | 2R | 11903581..11903774 | 200..7 | 970 | 100 | Minus |
| 2R | 25286936 | 2R | 11902371..11902551 | 836..668 | 415 | 92.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:11:36 has no hits.
UFO12302.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:31:55 Download gff for
UFO12302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MCPH1-RD | 145..1032 | 1..867 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:47:29 Download gff for
UFO12302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MCPH1-RB | 139..1026 | 1..867 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:53:03 Download gff for
UFO12302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MCPH1-RB | 139..1026 | 1..867 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:53:03 Download gff for
UFO12302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11902358..11902550 | 669..846 | 92 | <- | Minus |
| 2R | 11902619..11902840 | 448..668 | 99 | <- | Minus |
| 2R | 11903165..11903411 | 201..447 | 100 | <- | Minus |
| 2R | 11903581..11903779 | 1..200 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:47:29 Download gff for
UFO12302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7789863..7790055 | 669..846 | 92 | <- | Minus |
| arm_2R | 7790124..7790345 | 448..668 | 99 | <- | Minus |
| arm_2R | 7790670..7790916 | 201..447 | 100 | <- | Minus |
| arm_2R | 7791086..7791284 | 1..200 | 98 | | Minus |
