UFO12303.5prime Sequence
1022 bp (910 high quality bases) assembled on 2012-10-16
> UFO12303.5prime
AGTCGACATGATCCTGCTATCCGGACTTCTGCCGCTCCTGGGCGTCGTTC
TCTTGCACCTTGCGACCCCGACACAGGCCTTCTATCTGCCCGGACTGGCA
CCGGTCAATTTCTGCAAGAAAACCGACGTCTCATCCACATGCAAGTCGGA
AATCTTGTTGTACGTCAACCGCTTAAACACTGAGGAATCCGTAATACCCT
ATGAGTACCATCACTTCGACTTTTGTTTGGGCGAGGAGCAGAACTCACCG
GTGGAGAATCTGGGACAGGTTGTGTTCGGAGAGCGAATTCGTCCAGGACC
CTATAAAATTCAGTTCTTGGAAAACCAGCAATGTGCGACCACCTGTGTCA
AGACTTACAAAGGAGACGATCCGGCTAGCAACCGTCGTATGATGGTTCTT
AAGAAAGGAATCAGCTTGAACTACCAACATCATTGGATTGTGGACAACAT
GCCGGTTACATGGTGCTACCCACTGGAGAACGGCAAGCAATACTGCGGAA
TTGGTTTTCCCATGGGTTGTCTAGTTCGCAGTGATGGCGAGGGTTGTCCC
ATCAACTCTATATATAACCAGCCAATGCATTATTATCCATTCAACCATGT
GGATCTCGAGATTACTTATCACAGTGGACAGTCGGAGGACTGGGGAATTC
AGTTCGGCAACAGTGGACGCATAATCTCTGTAAAAGTGACTCCCAAATCT
ATTAAGCACACCGATAAGGAAAACCCCAATTGCTTGAGCACAGAGCCACT
GGCAATCAGTGAGAACTCTTTAAAGGCTGGAGAACAGCTGGAAATTGTCT
ACACGTACAGCGTGAAGTTTGTAAAGACGATTCTATCAAATGTCATCACG
TTGGGACTACATTTTGATCCATGCCGCACACGATATCCAGTGTTCCTCCA
TCTCCACTCCCTGTTATTGTCTTTTCTGAGTGGCATGTGCAATGATAATG
CTGCGTACGTGGCACAAAAGATATAGCCGCTATATCGATGATACGTGAGA
TGCAGAGGATTGGCTGGAACTG
UFO12303.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:11:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9318-RB | 2810 | CG9318-RB | 242..1234 | 3..984 | 4580 | 98.2 | Plus |
| CG9318-RA | 2581 | CG9318-RA | 242..1234 | 3..984 | 4580 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:11:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20732122..20732760 | 968..341 | 2660 | 97.3 | Minus |
| 2L | 23513712 | 2L | 20732822..20733018 | 340..144 | 985 | 100 | Minus |
| 2L | 23513712 | 2L | 20733926..20734068 | 145..3 | 700 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:11:39 has no hits.
UFO12303.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:31:56 Download gff for
UFO12303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9318-RA | 241..1247 | 1..993 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:47:31 Download gff for
UFO12303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9318-RA | 240..1246 | 1..993 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:53:05 Download gff for
UFO12303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9318-RA | 240..1246 | 1..993 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:53:05 Download gff for
UFO12303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20732822..20733016 | 146..340 | 100 | <- | Minus |
| 2L | 20733926..20734070 | 1..145 | 98 | | Minus |
| 2L | 20732091..20732760 | 341..995 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:47:31 Download gff for
UFO12303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20732091..20732760 | 341..995 | 96 | <- | Minus |
| arm_2L | 20732822..20733016 | 146..340 | 100 | <- | Minus |
| arm_2L | 20733926..20734070 | 1..145 | 98 | | Minus |
