Clone UFO12305 Report

Search the DGRC for UFO12305

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:123
Well:5
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptSin1-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO12305.5prime Sequence

704 bp (559 high quality bases) assembled on 2012-10-16

> UFO12305.5prime
AGTCGACATGGCGACCTACTCCAACCAGCATTGGCTGCTCTCCCACATCC
GCAACTCCTTCATATCCACGGACGACACCGGAATGTGCGAGACGGTGATG
CTGAGCGATGACATGCCCAAACACTATTTGCGAAAATTCGGTAACTCGGG
CGCTGGAGGAGATCACTATCATTGGCGACGGGCGCACAAGACACCGCCGA
CGGGGGGCGGGACAACACCGGAGCGGAACACCCGGCATCCGGATGCGCCA
CTCCAGGAAGTGGACTTCATCTGCTATCCGGGACTGGACCTCAGCGACGA
CGAGGAGGACATGTCCACGCACTCCTTTGACATCCAAATGTATCCGGAGG
TGGGCGCCCACCGCTTTCGCTCCAACACTGCCCAAAAACTAGAGAAACTG
GATATTGCCAAGCGAAGGGCGGCGCGCATCAAGAGTGTTAACTACCAGGA
GGAAGTGCAGCCACCGGAGAGCGATGATTTCTTTAAACGCAAAGAGTTGC
CCCTCAGCAAAGCTGAGCGAGTTAAAAATGAAACCGAAAGCCAACGACGA
TGATCTGTCAGATGAGGGTGTTCAGAGCCAGCTCACTGAACAGTTGGGCC
AAAAGTCCAAGCAAGCACAGAATCGCTTCATTGAATTCGCCCGCTTCGAT
GGCACCTCCCAAGTGGTATGCAACGAACGGATAACGTGTTTTAAATGCTT
CCCG

UFO12305.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:11:43
Subject Length Description Subject Range Query Range Score Percent Strand
Sin1-RA 2027 CG10105-RA 82..785 7..704 3290 98.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:11:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14411906..14412564 7..666 3160 98.9 Plus
Blast to na_te.dros performed on 2014-11-28 18:11:42 has no hits.

UFO12305.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:31:56 Download gff for UFO12305.5prime
Subject Subject Range Query Range Percent Splice Strand
Sin1-RA 91..799 1..704 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:47:32 Download gff for UFO12305.5prime
Subject Subject Range Query Range Percent Splice Strand
Sin1-RA 77..785 1..704 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:53:06 Download gff for UFO12305.5prime
Subject Subject Range Query Range Percent Splice Strand
Sin1-RA 77..785 1..704 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:53:06 Download gff for UFO12305.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14411901..14412609 1..704 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:47:32 Download gff for UFO12305.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10299406..10300114 1..704 98   Plus