UFO12306.5prime Sequence
1026 bp (878 high quality bases) assembled on 2012-10-16
> UFO12306.5prime
AGTCGACATGGCAGCGAAGCGGGCGGAAAGTCCGGAGAAGCGGGCTAGTC
CGGAGCCCACTCTGCGTGGACTAACCACAAAGGTGGCGCTGCGGCGTCTA
CATGAGGAGATTGAAAAACGGGTGCAACTGGAGCACGAGCGGCAATACGG
AGCGGAGAGCCCCTATCGAAAATTGCGGGCGGCCTTTGTGAAGCGGTACG
ATAGCCCACTGGGATGGCTTTCCATTGGAAGCAGTTTGCTGGCTAGTGGA
GCACTGCTCGCTACAGGAATGCTATGGCCCGCCTTGTGCCTGCTGGCCAT
CTTATCGCTGGACCTCTTTGTGGTGGTCCGGGAGAACAACCTGCGGCGCA
CAGAGATCTTCCGGAAGGCACGACACGCGATTTCGGAAATTAAACTAGCG
GAACAGCACTTCAGTGACGATTGGCAGCAATCCAACTATCCGCACCTAAG
TAATCCCATGTCGCCCTGCGTTTCCCTGCAGTGGACCTACCGAGATGGAA
AAATTGTCAACTTGCCGTGGGCTTTGTTGGTGCGCGGGGATTACATCGTT
CTACGGCCGGGACACATTTCACCCGGACCTTGTCACGAACTGGAGACAAA
TAAATTTTTTGCTGCTAACGAAATATATGGAGCTGCTCCTCACGGAGATC
CTCCAGTGAAACCTGTGGCACGACCTCCGCTGCCCAATCTCGTTTGTTGT
TTGGAAAGCACACCTTACCTGGATAACCTTACTGTTTGCCTCAAAACTCT
CTGAGGCGACCGCCGACCATCTACAATCAGCAGCGCTATCTGCTGGTCAC
CAAGTATATACAGCAGGTGGGGGCTTCATTAGTGCCCTAGGTTATCACGC
TCATCTCGGGGTTACTGCGCTCATGGCTATGGTCTGCCTACCGACGGAGA
GGCACACTGGCGCTTTGGTGCCTCGTCGATTCCTCGGCGGGCGGCATAGT
CCCCTATGGCGGCTTATCTTCCCGCTCAGGTGGATATCATGACTGTGGGG
ATAGCCTCGATTGCCATGTTTTTTCT
UFO12306.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:11:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)k05819-RD | 5201 | CG3054-RD | 143..1159 | 8..1022 | 4535 | 97.3 | Plus |
| l(2)k05819-RC | 4819 | CG3054-RC | 143..1159 | 8..1022 | 4535 | 97.3 | Plus |
| l(2)k05819-RA | 4864 | CG3054-RA | 143..1159 | 8..1022 | 4535 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:11:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4394543..4395178 | 158..792 | 3115 | 99.7 | Plus |
| 2L | 23513712 | 2L | 4394338..4394489 | 8..159 | 760 | 100 | Plus |
| 2L | 23513712 | 2L | 4395235..4395429 | 792..988 | 405 | 86 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:11:44 has no hits.
UFO12306.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:31:57 Download gff for
UFO12306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)k05819-RA | 135..1149 | 1..1014 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:47:34 Download gff for
UFO12306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)k05819-RC | 137..1151 | 1..1014 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:53:07 Download gff for
UFO12306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)k05819-RA | 137..1151 | 1..1014 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:53:07 Download gff for
UFO12306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4394332..4394489 | 1..159 | 97 | -> | Plus |
| 2L | 4394545..4395178 | 160..792 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:47:34 Download gff for
UFO12306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4394332..4394489 | 1..159 | 97 | -> | Plus |
| arm_2L | 4394545..4395178 | 160..792 | 99 | -> | Plus |
