UFO12307.5prime Sequence
829 bp (455 high quality bases) assembled on 2012-10-16
> UFO12307.5prime
AGTCGACATGCTGCCATCCACGGGTCTCTTTAAGGGCTTCTTGTGCCCTT
ACTTTGACGGCCAGGATGCGGCGTCCTGCAAGCGCCCCTTTTGCCACTTT
AAGCATGCTCGCAAAGACGAATTGGAGGCCGCTCCACCTGCAGAACCTTC
CCCCGTGCCCAAGTACAAGCCGGCACCCAAGTTGCTCTCCCTTCCACTGC
CCCAGATCACGCTATGTGCGCCCCGGAAGAAGTCCAATCTGGAGTACCAC
CCGGAGAAGCCGGCTCTTGACGCATCGCCGGCTAATAAGAAGCAGGAGGC
GTCCGTGGACAGTGCTCCCTAATATGTGCCCGGCCAGCCATCTGTTACAA
ATGGCGAAAAATATGACGATTGGCAGGCGGTACTCGAAAAGGAAATTGAT
GAGCAGATGCAGGTGGAGATTGAGGAGCAAGTCCAGAATAACGACGAATA
ACAGAAGATAGATACGGGTAGCTGAAAACGAGGAGGACCAGGAGAATACG
CAACTGACGGATGCTAGGGATAGCCACGAAAAGGATCGAAAGCCCAGCAA
GGAGCGGGAAATGGGATATAGAAAAGAAGAAGATCAGAGAGCTGAAAGGG
AAAAGATCTTAGACAGGGATCGGGACCGGGACCGGGACCGGCAAAAGACA
AAGAGAAGACCTGGATAGGTACAGAGATACGAAAAAATGATAGGGATAGC
GAAAGTCCTCCCACAGCGACCAGGAGCGCTCCGAGGAGCGAATACTGCAA
GCTCAGTTCCTCTAGCACAGTCTTCGTCTAGCTCCTCTTCCAGCAAAAGT
CATCCAGCCAGCGATCAGGCACGGCGACG
UFO12307.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:11:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12877-RC | 3250 | CG12877-RC | 111..939 | 8..829 | 3515 | 95.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:11:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27707375..27708077 | 115..808 | 2655 | 95.7 | Plus |
| 3R | 32079331 | 3R | 27707210..27707318 | 8..116 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:11:47 has no hits.
UFO12307.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:31:58 Download gff for
UFO12307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12877-RE | 101..937 | 1..829 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:47:37 Download gff for
UFO12307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12877-RC | 103..939 | 1..829 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:53:09 Download gff for
UFO12307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12877-RC | 103..939 | 1..829 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:53:09 Download gff for
UFO12307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27707202..27707318 | 1..116 | 97 | -> | Plus |
| 3R | 27707377..27708096 | 117..829 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:47:37 Download gff for
UFO12307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23532924..23533040 | 1..116 | 97 | -> | Plus |
| arm_3R | 23533099..23533818 | 117..829 | 95 | | Plus |
