UFO12308.5prime Sequence
1007 bp (897 high quality bases) assembled on 2012-10-16
> UFO12308.5prime
AGTCGACATGTCCGGGTCGGGTGCGTTTGACGATGAGCCGCCGCCGGAGC
CGCGGGACGGATGGCTACTGGTGCGCATCCATGTGCCGGAGCTGAATGTC
TACAAGTGTCTGCAGTTCCCATCGGAGCGGCTCGTTTGGGATGTCAAGCA
GCAGGTGCTCGCCTCGCTGCCGAAGGAACTGAAGGAGAGCTTCAACTATG
GCCTGTTTGCTCCACCTGCCAACGGCAAGGCGGGAAAATTTCTGGATGAA
GAACGCCGCCTGGGCGATTATCCTTTCAACGGACCCGTGGGATATTTGGA
GCTCAAGTACAAAAGGCGTGTGTACAAAATGTTGACCCTGGACGAACGCC
AGCTGAAGGCCCTTCACACGCGGGCCAATCTGCGTCGCTTTCTGGAGTGC
ATCAATGGCGGACATGTGGAGAAGATAGCCAAGATGTGTGCCAAGGGCCT
GGATCCCAATTTCCATTGTTCGGAAAGCGGAGATACTCCGTTGACAGTGG
CCACGGGCGCCAAGAAGCCAAACAAACTGCTCATCGCTCTGGTCAACGGT
GGAGCCTTGTTGGATTACAGGACGAAGGATGGCAGCACAGCTCTGCACCG
GGCTGTCGAACATGACTCCTTGGAGGCGGTCAGCACACTCCTCGAACTGG
GCGCCTCGCCGAATTACCGAGATGGGCGTGGCATCACCCCGCTGTACATC
TCCATCACCAGGAAGTGTGAGGCGAAGATCACAGAGAGTCTGCTGCATGA
CCATGCCACGTTGGGAATCCAGGACAGCCAGGGCTGGAACGAGGTTCATC
AGCCTGTCGGCATGGCCCTGTCCAGCACCTGAACACCTGCTGTTCTACGG
TGCTGATAATGGACGGCCGCAATGCGTCCGGCAATAGTCCGCTGCATGTG
TGCGCTGTTAACAACCAAGAGGCTTGTGCTAGAATGCTTCTCTTTCCCGG
GGCGCACAGGGGCGGCCCAAAAGAACTTTGCATCAACTCCCCTACAGGTG
TGGCTGT
UFO12308.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:11:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosap-RC | 7541 | CG30483-RC | 1536..2507 | 7..981 | 4630 | 98.7 | Plus |
| Prosap-RA | 7979 | CG30483-RA | 1536..2507 | 7..981 | 4630 | 98.7 | Plus |
| Prosap-RE | 7346 | CG30483-RE | 1536..2331 | 7..802 | 3980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:11:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14069948..14070281 | 633..300 | 1670 | 100 | Minus |
| 2R | 25286936 | 2R | 14069715..14069885 | 802..632 | 855 | 100 | Minus |
| 2R | 25286936 | 2R | 14091992..14092161 | 176..7 | 850 | 100 | Minus |
| 2R | 25286936 | 2R | 14070352..14070479 | 301..174 | 640 | 100 | Minus |
| 2R | 25286936 | 2R | 14069263..14069411 | 950..802 | 605 | 96.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:11:49 has no hits.
UFO12308.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:31:59 Download gff for
UFO12308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosap-RB | 1526..2489 | 1..966 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:47:39 Download gff for
UFO12308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosap-RA | 1530..2493 | 1..966 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:53:11 Download gff for
UFO12308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosap-RA | 1530..2493 | 1..966 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:53:11 Download gff for
UFO12308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14091993..14092165 | 1..175 | 98 | | Minus |
| 2R | 14070352..14070477 | 176..301 | 100 | <- | Minus |
| 2R | 14069250..14069411 | 803..966 | 94 | <- | Minus |
| 2R | 14069715..14069883 | 634..802 | 100 | <- | Minus |
| 2R | 14069948..14070279 | 302..633 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:47:39 Download gff for
UFO12308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9957220..9957388 | 634..802 | 100 | <- | Minus |
| arm_2R | 9956755..9956916 | 803..966 | 94 | <- | Minus |
| arm_2R | 9957453..9957784 | 302..633 | 100 | <- | Minus |
| arm_2R | 9957857..9957982 | 176..301 | 100 | <- | Minus |
| arm_2R | 9979498..9979670 | 1..175 | 98 | | Minus |
