UFO12309.5prime Sequence
986 bp (887 high quality bases) assembled on 2012-10-16
> UFO12309.5prime
GTCGACATGCCACCCAAGATGGAGCCGATTAGCGTGCGCACCGCGCGTCT
GAACAACCTGATTCTGGGCAAAGGAGCTGGCGTCTGTGCGAAGCCCGCTG
GAAGCGCCTCCGGATCAGGTATTCCCGCCTCCACCAGGAGAAGCATTGTA
CCCGTGAGCACCACTAGCGCCGCCGTGGCCGAGGCCATCTGCCGCGAGGG
ACTCCTGGACGCCTTCTGTCTGCTGTACAACGAGTGCGACAAGGATACGC
TGAAGAAGCGCGATCGCAACATCGCCGAGTTTGTCAACAAATTTCGTCCC
ATCATAGAGGAGACCCGCAAACTCAGGGTCAACGCAGATGACTTCCTCAT
CAAGACGCTTATTGGCCAAGGATACTTTGGCAACGTTCACCTGGTGGTGG
AGCGGCAAACCAACGACATATACGCCATGAAGAAGATCAAAAAGTCGGTG
GTGACGACGTCACAAGTCAAGGAGGAGCGCGATATCATGTCCATTCGCAA
CTCTGAATGGCTAATCAATCTGCAGTATGCCTTTCAGGATAACGACAATC
TGTACCTGGTCATGGAGTACATGCCCGGCGGAGACCTTCTCAGCTTGATG
TCACGCCACGGCCCTTTCGATGAGGACTTGGCTCGTTTCTATCTGGCCGA
GCTCACAGTGGCCCTGCACACATTGCACGAGATGGGCTATGTGCATCGGG
ATATAAAGCCTGAAAATATACTGATTGATCGTTTTGGCCATATTAAACTG
GCTGATTTCGGTAATGCCGCTGCCTTGATCGCGATGGCCATGTGCTGAGT
TTGTCGCGGTAGGAACACCGGATTACATAGCTCCAGAGCTGCTGCAACCA
TATCACTACAGCTGTCCAAGTCGATGCACGATGTCAGCTGCGATTATTGT
CCATGGCATTATAGATATGAGTATATGCGAGACACACTTTTCACGAGACA
TGTACCCGAGAACATACTCCAGATTCTCTCCCAATG
UFO12309.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:11:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sti-RA | 6072 | CG10522-RA | 148..1140 | 6..983 | 4525 | 98.1 | Plus |
| sti-RB | 6084 | CG10522-RB | 148..1152 | 6..983 | 4395 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:11:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12513472..12513826 | 884..536 | 1480 | 97.7 | Minus |
| 3L | 28110227 | 3L | 12514382..12514668 | 292..6 | 1435 | 100 | Minus |
| 3L | 28110227 | 3L | 12513880..12514125 | 538..293 | 1230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:11:52 has no hits.
UFO12309.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:32:00 Download gff for
UFO12309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sti-RA | 116..1117 | 1..986 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:47:40 Download gff for
UFO12309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sti-RA | 142..1143 | 1..986 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:53:12 Download gff for
UFO12309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sti-RA | 142..1143 | 1..986 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:53:12 Download gff for
UFO12309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12514382..12514674 | 1..292 | 99 | | Minus |
| 3L | 12513474..12513824 | 538..882 | 98 | <- | Minus |
| 3L | 12513881..12514125 | 293..537 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:47:40 Download gff for
UFO12309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12506574..12506924 | 538..882 | 98 | <- | Minus |
| arm_3L | 12506981..12507225 | 293..537 | 100 | <- | Minus |
| arm_3L | 12507482..12507774 | 1..292 | 99 | | Minus |
