UFO12310.5prime Sequence
832 bp (601 high quality bases) assembled on 2012-10-16
> UFO12310.5prime
AGTCGACATGGATGCGTCTCCCCTGTCGCCGGAACAGGCTCCCATCTTGG
TCACGGGGAGGTCATTGGACCAGCAGGTGGACGCCAGTTCGCCCAACCAC
TCGAACTACTCGAATCTCACGAACAGCAGCAGCAGCGGCAGCAGTGCCAG
CAGTCCTTCGGCCTGCTCGTCCTCGTCTTCCTCTTCGTCGGCTCCCCAAT
ACAGTGCGGATATCCGGGCGGCTGCACTGCATCCGCAGCAGCCACAACAG
CAGCAGAGAGGATCTGCCTCCGGATCGCGATCGAGATCAGGATCGACGAA
AACTTGTGAGCTGGACGTGGGCGAGGAGCGTGATACCTTCTCGCCGGTCT
CCAGTCCGGATTGCAACGGAGCCCGCTGCCGTGGAATGTTCTGCCCTCTT
CGAGTGGCTCTGTGGACAACAAGATCTACGAGGGAGGCAGCAAGGGAAAG
CCCCCCTCCAAGGAAGAGAAGCAGCGCCAGAACGAGGAGATCGTGTGCAT
GGAGACCTCGACGGTGTCCACCGAAACTGGTTCCTGGGAGTCCATGTACC
CTGCAGCGAGCGTTGCTCCGCAAGCTGAACCCGAGGAAATGGAAGCCACT
ACGGTTTTCAAAGGCATCAGTGCCAGCACTTTGCTGCGCGACCTAGAAGA
AGCGGGATCAGCCGTTGTCCACCTCAGGGACCAGCGCCTGCTTCATAGAC
GCCTCATCGCTGGAGGGACGAGGATGAAGGTGTTGTCCTTCCCCCAGCCT
AGATGGCCACGGCCAGAAGGAAAAAAGTCGGGCAAGAAGCGACTGGCGAC
CAAGAAACCACGATATGACCCTCGCCCACGAA
UFO12310.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:11:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13917-RD | 8335 | CG13917-RD | 1356..2170 | 8..829 | 3725 | 97.6 | Plus |
| CG13917-RC | 8539 | CG13917-RC | 1560..2374 | 8..829 | 3725 | 97.6 | Plus |
| CG13917-RB | 8076 | CG13917-RB | 1558..2372 | 8..829 | 3725 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:11:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1593670..1594455 | 8..800 | 3540 | 98.5 | Plus |
Blast to na_te.dros performed 2014-11-28 18:11:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6716..6763 | 210..256 | 120 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2324..2400 | 226..303 | 117 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2285..2332 | 211..255 | 116 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6775..6848 | 226..303 | 111 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6754..6784 | 226..256 | 110 | 83.9 | Plus |
UFO12310.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:31:51 Download gff for
UFO12310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13917-RB | 1554..2352 | 1..810 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:47:21 Download gff for
UFO12310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13917-RA | 1356..2154 | 1..810 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:52:59 Download gff for
UFO12310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13917-RB | 1554..2352 | 1..810 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:52:59 Download gff for
UFO12310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1593666..1594464 | 1..810 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:47:21 Download gff for
UFO12310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1593666..1594464 | 1..810 | 97 | | Plus |
