UFO12311.5prime Sequence
422 bp (254 high quality bases) assembled on 2012-10-16
> UFO12311.5prime
AGTCGACATGAGCGAAACAAATGAGTCCAATGACACGGCCGCCCAATCCG
CCGAGGGCGAGCGGCCCAGCTTTTTGGTGGGTGATGAGATCGACGAGCGG
GCCGCCGAGGCGGGCGAGGCATGTGACGAGTTCCCCCTGAAGATGCAGAA
CGATGTCCGCCAGAATGGCGATATTTCCGAGCGGCGCAAGCGGTTAAGGC
CGAGTATGTCGCGGGGGCACAGGGCTGGGCCAGGGACCCGGCACCAGGGA
TTGCCGATCTTCCACATCCGCCACCAACCGAGAGGGGTTCGTGAAGCGCT
TTGGGCGGCACCCGGAGTGAATCAAACAAAGTTCCTGAGATGGCCCAACA
ACGGGTATTCCCGGCCGGTCAGGTGCATGGCAATCCATCCCGGAAAAGGG
GCGTACAAAATGTTTTAAAAAC
UFO12311.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:11:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ACC-RG | 7814 | CG11198-RG | 471..854 | 8..415 | 1280 | 91.2 | Plus |
| ACC-RF | 7860 | CG11198-RF | 517..900 | 8..415 | 1280 | 91.2 | Plus |
| ACC-RC | 7950 | CG11198-RC | 607..990 | 8..415 | 1280 | 91.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:11:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7984880..7985003 | 199..76 | 620 | 100 | Minus |
| 2R | 25286936 | 2R | 7985064..7985134 | 78..8 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:11:28 has no hits.
UFO12311.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:31:52 Download gff for
UFO12311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ACC-RA | 648..879 | 1..234 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:47:23 Download gff for
UFO12311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ACC-RC | 601..832 | 1..234 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:53:00 Download gff for
UFO12311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ACC-RC | 601..832 | 1..234 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:53:00 Download gff for
UFO12311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7982973..7983007 | 199..234 | 94 | <- | Minus |
| 2R | 7984881..7985002 | 77..198 | 100 | <- | Minus |
| 2R | 7985066..7985140 | 1..76 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:47:23 Download gff for
UFO12311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3870478..3870512 | 199..234 | 94 | <- | Minus |
| arm_2R | 3872386..3872507 | 77..198 | 100 | <- | Minus |
| arm_2R | 3872571..3872645 | 1..76 | 96 | | Minus |
