Clone UFO12315 Report

Search the DGRC for UFO12315

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:123
Well:15
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptHem-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO12315.5prime Sequence

708 bp (562 high quality bases) assembled on 2012-10-16

> UFO12315.5prime
AGTCGACATGGCACGCCCAATTTTTCCGAACCAGCAGAAGATAGCTGAGA
AACTAATCATCTTGAATGACCGCGGCCTGGGCATTCTTACGCGGATATAC
AACATCAAGAAAGCATGCGGCGACACCAAGTCGAAGCCAGGCTTCCTCTC
CGAGAAGTCGTTGGAATCGAGCATCAAGTTTATCGTGAAGCGGTTCCCCA
ACATCGACGTCAAAGGGCTCAATGCTATTGTAAACATCAAAGCGGAGATT
ATTAAGTCGCTGTCCCTGTATTACCACACATTCGTGGACCTACTTGATTT
CAAGGACAATGTATGCGAACTGCTCACCACGATGGACGCCTGCCAGATTC
ACCTGGACATCACATTGAACTTCGAGCTGACCAAATATTATCTGGACTTG
GTTGGGACCTACGTGTCCTTGATGATTGTTTTGTCTAGGGTCGAGGACCG
CAAGGCAGTTCTGGGCTTGTACAATGCCGCCTACGAGCTGCAAACATCAG
GCGGACACGGGCTTCCCCGCTTGGGGCAGATGATTCTGGACTACGAGGTC
CCTTAAAAAGTTGGCGAGGATTCATTCCCCACAGCGCTGCTACAGTGCGT
TGCGGTCGCTGACCTCATCTATGCACTGCGAACTGCAGCAGACAGTGGAG
GGAAATGCAAAGTGAGTCTGGTAGCATCGCATCTCCTAGGCGTCCGCACT
GACCATGT

UFO12315.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:12:05
Subject Length Description Subject Range Query Range Score Percent Strand
Hem-RA 3777 CG5837-RA 209..893 8..674 2980 97.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:12:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22287351..22287987 632..8 2645 97.6 Minus
Blast to na_te.dros performed on 2014-11-28 18:12:04 has no hits.

UFO12315.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:32:03 Download gff for UFO12315.5prime
Subject Subject Range Query Range Percent Splice Strand
Hem-RA 206..942 1..708 95   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:47:48 Download gff for UFO12315.5prime
Subject Subject Range Query Range Percent Splice Strand
Hem-RA 202..938 1..708 95   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:53:19 Download gff for UFO12315.5prime
Subject Subject Range Query Range Percent Splice Strand
Hem-RA 202..938 1..708 95   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:53:19 Download gff for UFO12315.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 22287258..22287994 1..708 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:47:48 Download gff for UFO12315.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22280358..22281094 1..708 95   Minus