UFO12322.5prime Sequence
879 bp (821 high quality bases) assembled on 2012-10-16
> UFO12322.5prime
AGTCGACATGGCGAATAGATTAGGAAACCATGAAGTTACCCGCACCGCAC
GTGAAGTGCAGCAAAACTTTGCCGAGTCGCTCGGCTACGCGGAAGAGATA
ATCTGGGATCTGTTGTCCCATGAACAACATGACGTGCTAAGGGGCAAACT
CTGTCAATTGATTCGTGATTCTCCGGAACCGAAAACTGCAACGGAAACTG
AAAAAGACAGAAAAATCCGGCTGAAGGTCAACGCAGATAATGAGCGCGCC
CGTCAGATCATTTTCGATTCCGTTTGGCAGCAACGTGAGTTGGACTTACA
GATTGTATATAGTATAGTACATTTTTTCGCTGCCTTAACTGCGTACAATT
GTTTTCCAGGAAAGTATACCAACCGTCAATCGCTGACGGCGATCATTTAC
GTAATGGTGGTAACTGACGAAACGGACGTCAATCGCGCCGAGGACGCCAG
AGTCTTCAGCGTGCACCCAGTCTTTCGGGCCCGTCGATGCGTCGTTGGCA
GTAGTGGCACCAGCAGCGTCAGCTCGAATTGCTGCAATCTGTTTATCGAC
GAGCTTGGTCGGGTCTACCAAAACTGGGAGATGTATGTGACCACCAACGA
GTTGCCTGCCGGAGTGATGGTGGCCCCAGAGAAGGGTATTTACCGCTTGG
TCAGGGATCAAGTACGTCTGGATAAGTACACAACGCCGGCGGGCACGACC
AACAGGAACGTGCTGGGCTACCTGATACTGGGTCGGCAGTCGGAGGATTT
TTGCTGCCTGTGTGCCCATTGCTGCCCTGCTACGCTGCCCGTATCGCTCC
GCTGATGGGCGCACCGGAGTATAGTTGTCAGTGCTGAACGCCGCATTGGG
CTGGCACAGCTATTTCAATCGCAGCCACA
UFO12322.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:11:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pst-RF | 2479 | CG8588-RF | 93..976 | 8..877 | 3960 | 97.6 | Plus |
| pst-RG | 2404 | CG8588-RG | 370..901 | 360..877 | 2200 | 96.1 | Plus |
| pst-RE | 2551 | CG8588-RE | 517..1048 | 360..877 | 2200 | 96.1 | Plus |
| pst-RG | 2404 | CG8588-RG | 93..370 | 8..285 | 1390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:11:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7359468..7359850 | 494..112 | 1915 | 100 | Minus |
| 3L | 28110227 | 3L | 7359063..7359390 | 817..494 | 1410 | 98.2 | Minus |
| 3L | 28110227 | 3L | 7359919..7360024 | 113..8 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:11:56 has no hits.
UFO12322.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:32:00 Download gff for
UFO12322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pst-RF | 236..1062 | 1..824 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:47:42 Download gff for
UFO12322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pst-RF | 89..915 | 1..824 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:53:14 Download gff for
UFO12322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pst-RF | 89..915 | 1..824 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:53:14 Download gff for
UFO12322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7359067..7359389 | 495..813 | 98 | <- | Minus |
| 3L | 7359468..7359850 | 112..494 | 100 | <- | Minus |
| 3L | 7359921..7360028 | 1..111 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:47:42 Download gff for
UFO12322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7352167..7352489 | 495..813 | 98 | <- | Minus |
| arm_3L | 7352568..7352950 | 112..494 | 100 | <- | Minus |
| arm_3L | 7353021..7353128 | 1..111 | 96 | | Minus |
