UFO12326.5prime Sequence
848 bp (731 high quality bases) assembled on 2012-10-16
> UFO12326.5prime
AGTCGACATGAGCGTTTTCGATGACTTCCAGCGTCTGTGGATGCAGCGAT
TTCCGCAAAGCTCTCTATCCGATGCATGGGAACAAGATGTTCGGGCTAGT
CTCGAGCGACACAAAGTGCGCATTAATGAGCTAAGCAAGGAGCTTGAGCA
GGAGACGCTCTATGTGGAGTATCTAGAGCGTCTGCTGTCCGACGTGGAAC
GGTATCGCGTTTCTGGCGGGGATCCAAAGGCACTCTTTGAGGCTGCTAGC
GGTAGTTGTGCTAGCAGCAATAACAGCAACTGCAGCAGCACCACCAATGG
AGCTACACAAGAAGAAAGCAACACTAATCTGGACAAAGATTTTAAATCTA
GTTTAAATCTGCGCGAGTCTCCTTCTTCCACTGGCGCCAAGGACAAGGAT
CGCCTGTCGCTCAACCCAGACAACAAATACACAACACACACAAATGCCGT
TATAGGTGGGATCGGATCGGAAAAGGTGAGCGGTCCACTTCACTCCACTC
AGATCACGGCGGACGGCAAACGAACAGGGGAGCTGTATTTAAAGCGGGAA
GAGACAAATGCAAGGATAGTAATAGTGAGGACACCGATGGGGCCCTGCAG
CAGTGCATCACGGATTGGCGGCGTCTTTAAAAGCCCAGCCGGATACGTGG
CAGGAGGGCGTCTAGAAACGATGTCGATATCGATAACCGCTGCGCAAGTC
GACGTCACATACGTACTGTCATCAGTCAAGAGCCAAAGACAAGAAGCGCT
GATGACTACTCGTCATCGGGATCGGTGACGCAGCAGCACAATCACATCAC
ATTTTCTCGATATTCGAGCCACCGCTCACCGCTTTCGCATCGCTACAT
UFO12326.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:12:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGAP1A-RB | 5012 | CG00000-RB | 303..1170 | 6..844 | 3640 | 96.5 | Plus |
| RhoGAP1A-RA | 5082 | CG00000-RA | 303..1170 | 6..844 | 3640 | 96.5 | Plus |
| RhoGAP1A-RE | 5089 | CG40494-RE | 307..1174 | 6..844 | 3640 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:12:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 129080..129417 | 6..343 | 1690 | 100 | Plus |
| X | 23542271 | X | 132807..133177 | 344..709 | 1605 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:12:33 has no hits.
UFO12326.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:32:11 Download gff for
UFO12326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP1A-RB | 299..1175 | 1..848 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:07 Download gff for
UFO12326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP1A-RE | 303..1179 | 1..848 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:53:37 Download gff for
UFO12326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP1A-RE | 303..1179 | 1..848 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:53:37 Download gff for
UFO12326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 129076..129417 | 1..343 | 99 | -> | Plus |
| X | 132807..133341 | 344..848 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:07 Download gff for
UFO12326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 25463..25804 | 1..343 | 99 | -> | Plus |
| arm_X | 29194..29728 | 344..848 | 94 | | Plus |
