UFO12329.5prime Sequence
795 bp (662 high quality bases) assembled on 2012-10-16
> UFO12329.5prime
AGTCGACATGGAATTAGAGAATATTGTGGCCAATACGGTCTACTTGAAAG
CGAGAGAAGGTGGTTCCGACAGCAACAAGGGAAAGAGCAAAAAATGGCGC
AAAATATTGCAATTCCCACACATATCGCAATGCATCAACCTGAAAGACAA
ATTAGATATAAGCTATGGCTACGTGATAGATCAGCAACCCATTGGTCGTG
AGCTCTTCCGTCTGTTTTGCGAGAACAAACGGCCCGTCTACTTTCGCTAC
ATCACCTTCCTGGATGAGGTGGTCAAATACGAGATCGAGTACATCTCGAA
CCGCATATTCATTGGCCATGACATCGGCCGTCGCTTCTTGGATGTCGAGG
CACAGCTGGAGCTGCGCAACGGCAGCGGGGGCGACGCCTTGGACGCCGAG
ACGCAGGAGGAGCTGCTGCTCAACAGCAGCAATGCCAATCCAACTGAAAC
AGCTGAGACTGAACACTGCAACAATACCACCGCCAACAACTGCAACAACA
TCAACAACAGCAACAACTCGCAGCACAGCAGCGACATCAATCACAAGAAG
CTGGACACGCGCAATCACAACGGCGACGACGCCACTGGGAACGGGAGCAG
CCACCAGGACGACGGGACGAGAGCGTCAGTGCCCAGGAGGGCCATGACGA
TGCGAAAAATGTGTGCGCGAAAGGGAGCGCGCGAGAAGGGTTCCCCGGTG
GGCGGTATCTGACAACTCGGGTGACGTGCTACGATGATCTCATTGCGCAG
TGCGTACAACTCACAGCGCGCAGGACTCTTGCCGCCAGTGTGGAC
UFO12329.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:12:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gprk2-RB | 3545 | CG17998-RB | 1091..1853 | 8..756 | 3245 | 96.5 | Plus |
| Gprk2-RA | 4690 | CG17998-RA | 1139..1901 | 8..756 | 3245 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:12:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31453647..31454034 | 273..659 | 1800 | 98.2 | Plus |
| 3R | 32079331 | 3R | 31453464..31453586 | 154..276 | 615 | 100 | Plus |
| 3R | 32079331 | 3R | 31453309..31453406 | 58..155 | 490 | 100 | Plus |
| 3R | 32079331 | 3R | 31433837..31433890 | 8..61 | 270 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:12:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6943 | 404..629 | 261 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2540 | 404..606 | 255 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2301..2549 | 398..638 | 253 | 59.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6919 | 352..540 | 236 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2820..3011 | 421..606 | 163 | 60.1 | Plus |
UFO12329.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:32:13 Download gff for
UFO12329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gprk2-RA | 1130..1782 | 1..654 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:12 Download gff for
UFO12329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gprk2-RA | 1134..1786 | 1..654 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:53:43 Download gff for
UFO12329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gprk2-RA | 1134..1786 | 1..654 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:53:43 Download gff for
UFO12329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31433832..31433888 | 1..59 | 93 | -> | Plus |
| 3R | 31453311..31453406 | 60..155 | 100 | -> | Plus |
| 3R | 31453466..31453586 | 156..276 | 100 | -> | Plus |
| 3R | 31453651..31454029 | 277..654 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:12 Download gff for
UFO12329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27279188..27279308 | 156..276 | 100 | -> | Plus |
| arm_3R | 27259554..27259610 | 1..59 | 93 | -> | Plus |
| arm_3R | 27279033..27279128 | 60..155 | 100 | -> | Plus |
| arm_3R | 27279373..27279751 | 277..654 | 99 | == | Plus |
