UFO12330.5prime Sequence
834 bp (412 high quality bases) assembled on 2012-10-16
> UFO12330.5prime
AGTCGACATGGATGTGCCCGATGACAATTTTGGGCCGTCAAAGCCGTGTG
ACAAGCAGCCCTTAGCTGGCAACTCTAGCAGCGCTACCAATTCATCGTCG
CATACCGGTGGTAACGGTAACGTTGATTCCGCATTCGAATCATCTACAGC
TGCAGGACCTAGTTCCGGCGCCAATCAAAGTAGCACAGGCGGTGCTATAG
ATGAACAAGGTTCCATTGGTGAACAGAGTGCCGGCGTGGGACAAAACATT
ATTGAGGGCGACTTGCTGGTGTTAAATGCCAATTCCACAAACGGGGATCT
TTCGACTCACCGGGATGGCTCTAGCTTTAAAAACTCGAAAACTGAGCAGG
GAAAAAAAAGTACTATGATTAGGACTTCAAAAGACATTAAATGACCAAGA
AGTCAAATTTGAACCGCCGGCAGGACCCCGGTGGCCCGTCAACGTGAACG
TCATCGTTGAAGCCCCAGCACGCATCGGTGACGATCTTGAACCGTGCGAT
TTAGGTCTAATGGGATGGACTGGAGAATTCCCAAAGCTAACACCCATATC
CAACATCGAAAGCAACTCGGATAAAGAACCGCTGTCGACGGCCAAGCCAG
GTGTACTGCCATGGAGTGGCCTAAGGGTTTTTCCGAGAGTGGAACCACAA
GAGGAGACAGCGGCAGGTACAACAAAGCCGGCTCATATCACTAATAGTCT
GAGGAGCAGCAGCAGCAGCCGTCTCTAACACGCGATATGACGTCGCACTC
GACGCCTCCAGGGGGAATTGATGCAGCCATAAAGCCTTGACGCAAAAAAA
GTCAAATGCAACTGTATGCACACATCAAGTCAGT
UFO12330.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:12:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2247-RD | 3560 | CG2247-RD | 124..935 | 4..814 | 3380 | 96 | Plus |
| CG2247-RB | 3563 | CG2247-RB | 124..935 | 4..814 | 3380 | 96 | Plus |
| CG2247-RA | 3767 | CG2247-RA | 124..935 | 4..814 | 3380 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:12:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11610474..11610832 | 362..4 | 1750 | 99.2 | Minus |
| X | 23542271 | X | 11609567..11609714 | 730..584 | 675 | 98.6 | Minus |
| X | 23542271 | X | 11610202..11610346 | 584..436 | 570 | 95.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:12:44 has no hits.
UFO12330.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:32:14 Download gff for
UFO12330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2247-RA | 116..951 | 1..831 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:14 Download gff for
UFO12330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2247-RA | 122..957 | 1..831 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:53:46 Download gff for
UFO12330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2247-RA | 122..957 | 1..831 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:53:46 Download gff for
UFO12330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11609459..11609713 | 585..824 | 92 | <- | Minus |
| X | 11610202..11610413 | 360..584 | 93 | <- | Minus |
| X | 11610477..11610834 | 1..359 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:14 Download gff for
UFO12330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11503492..11503746 | 585..824 | 92 | <- | Minus |
| arm_X | 11504235..11504446 | 360..584 | 93 | <- | Minus |
| arm_X | 11504510..11504867 | 1..359 | 98 | | Minus |
