UFO12331.5prime Sequence
1012 bp (890 high quality bases) assembled on 2012-10-16
> UFO12331.5prime
AGTCGACATGTCGTTTGTGGGCGGGGGCGGGTGCGGTGGCCAGGACGTGC
ACAAGTTTGTGGAGGCCCTGCAGGCGGATTTCAAGACCCTCTCGCTGGAG
ACCAAGAAGAAGTATCCTCAGATCAAGGAGGCGTGCGAGGAGGCCATTTC
CAAGCTCTGCACAGCTGGCAGCAGCCAGCAAAACTCGGTGTACTACACCG
TCAACCAGATACTCTATCCGCTGGTGCAGGGATGCGAGACCAAGGACCTC
AAGATCATCAAGTTTTGCTTAGGCATGATGCAGCGGCTCATCACCCAGCA
GGTGGTGGACCAGAAGGGCGCCCTATACATCACCAACGCACTGTGGACCC
TAATGGAGAACAACATCGAGGAAGTCAAAGTGCTGCAAACAGTAACTCTT
TTGCTGACCACCAATACGGTGGTGCACGGCGACACATTGGCCAAGGCCTT
AGTTCTGTGCTTTCGCCTGCACTACGCCAAAAATCCCACAATTGTGAATA
CGGCCGGTGCCACCATCCGGCAGCTGGTGTCCCTGGTGTTTGAGCGAGTG
TACCTGGAGAAAGACTCGGTTTCCAGCCTCCAGCAGCAACAGTCCAGTGG
TTCGCCAGCTGAGGGAGAGGGCGGAAATCACGATGTGCAGACCTTTGCTT
CGGATGCATTCCTGCTATTTCAGGATCTTGTGCAGTTGGTAAACGCGGAT
CAGCCCTACTGGCTGTTGGGCATGACCGAAATGACGCGCACCTTTGGTCT
GGAGTTACTTGAGGCCGTGCTGACCAACTTCAGTGCCGTGTTTCACGAGA
GTAACGACTTTCGACTGCTACTTAAAGGAACGAGTCTGTGCTTGGTCATG
AAGCTTCTTCTCGCCAAACGTCAAGCATCGCCAGCTGCCTGCACCTAGGC
AATGAACGCTCCTGGTGCCGGCCGAAGAAACCTATTTCCAATTAGCATGC
GTTGCCTGCGCCTCGGGCCTATGACTTATACAAAATACACACTAAACTGA
TACAGAAAGTGG
UFO12331.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:12:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mon2-RC | 5479 | CG8683-RC | 196..1189 | 7..999 | 4565 | 97.9 | Plus |
| mon2-RB | 5806 | CG8683-RB | 196..1189 | 7..999 | 4565 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:12:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8122709..8123247 | 799..261 | 2680 | 99.8 | Minus |
| 2L | 23513712 | 2L | 8123304..8123437 | 262..129 | 670 | 100 | Minus |
| 2L | 23513712 | 2L | 8123691..8123815 | 131..7 | 625 | 100 | Minus |
| 2L | 23513712 | 2L | 8122348..8122541 | 985..791 | 415 | 88.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:12:47 has no hits.
UFO12331.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:32:15 Download gff for
UFO12331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8683-RB | 181..1188 | 1..1006 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:16 Download gff for
UFO12331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mon2-RB | 190..1197 | 1..1006 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:53:48 Download gff for
UFO12331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mon2-RB | 190..1197 | 1..1006 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:53:48 Download gff for
UFO12331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8122348..8122532 | 800..985 | 91 | <- | Minus |
| 2L | 8122709..8123245 | 263..799 | 99 | <- | Minus |
| 2L | 8123304..8123435 | 131..262 | 100 | <- | Minus |
| 2L | 8123692..8123821 | 1..130 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:16 Download gff for
UFO12331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8122348..8122532 | 800..985 | 91 | <- | Minus |
| arm_2L | 8122709..8123245 | 263..799 | 99 | <- | Minus |
| arm_2L | 8123304..8123435 | 131..262 | 100 | <- | Minus |
| arm_2L | 8123692..8123821 | 1..130 | 98 | | Minus |
