UFO12332.5prime Sequence
772 bp (447 high quality bases) assembled on 2012-10-16
> UFO12332.5prime
AGTCGACATGTTTAAGTGGGTTACGCCGGCCTCAACGGCGACGTTGTCCC
GCTGCACACTGCCAGCAACAACAGCAGCCACAACAACAACAACGGCGATG
GCAGCAACGAGAACAGCAACGACAACGACGAGAACAACAAGACCACAACT
ACTTTCCATCGCTTTAACAAGTTTAATAATAATAGTCGCATCATTTGTGC
CGACAACAAGTGGATTTAGATCAATTGAAACGAATGGCGGTGGTCGCAAG
CTCTTTGGGGGCTATCGCATCACACCGAAGCACTGCCGTGCCACCAAGAC
GCTGCCCAGCTCGGATCCACGGGCCAATGGACCCACCATCTGCATGTTTA
ACCACGAGTGCGCACAGCGGGGGGCGAAGGGGGGGGCGCCTGCATGGACG
GGTTCCCCTTCGGCGCCTGCTGCCAGATCCCGCCCACCCACGAGTTGGCA
GCCCGCTGATAACGAGGCGCAGACGCCTACTTCCAGCAGCACCAGCAGAG
ACAAGCTCCAGCAGTCAGCAGCCCAATCCTCGTCGAAGCTACGGCGAAAG
CAACAGTCATTGAGCGAGGAGCAGGGGACAGCAGCCGTCGCAGACATCTA
CGATCAGCAAACCTGAAAAGTGTACAGCAACTGACAGAGCATAGCTCATC
CCCACGAGCTACGCGAGACCCACACAGATACATCGATCGAGACCCGAAGG
AGAATGGATCTACACGTCTCACAGCATATCCATCTCTCGCATGGATTGGA
GACCCCACAGAAGCTCACGTAA
UFO12332.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:12:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8213-RD | 6637 | CG8213-RD | 741..1384 | 6..633 | 2715 | 96.4 | Plus |
| CG8213-RC | 6171 | CG8213-RC | 416..1059 | 6..633 | 2715 | 96.4 | Plus |
| CG8213-RB | 6439 | CG8213-RB | 741..1384 | 6..633 | 2715 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:12:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8975063..8975445 | 609..239 | 1250 | 94.5 | Minus |
| 2R | 25286936 | 2R | 8984925..8985160 | 241..6 | 1180 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:12:50 has no hits.
UFO12332.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:32:15 Download gff for
UFO12332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8213-RC | 394..1042 | 1..633 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:17 Download gff for
UFO12332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8213-RB | 736..1384 | 1..633 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:53:49 Download gff for
UFO12332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8213-RB | 736..1384 | 1..633 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:53:49 Download gff for
UFO12332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8975035..8975444 | 240..633 | 94 | <- | Minus |
| 2R | 8984927..8985165 | 1..239 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:17 Download gff for
UFO12332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4862540..4862949 | 240..633 | 94 | <- | Minus |
| arm_2R | 4872432..4872670 | 1..239 | 98 | | Minus |
