UFO12334.5prime Sequence
1018 bp (891 high quality bases) assembled on 2012-10-16
> UFO12334.5prime
AGTCGACATGGTAAAAAGAAAAAGTACTGCCGCGGCCAAGCCCGTTGCAG
AACCGATTCTCAGATATCCTCTCATATCCGAAAATGAGGTAATGGATCGA
GAAGCTCGGTACATGAGCCGCCTTAATGATTTCACTGTTAGTGCGGAGTT
AGTCAAGGGTGCCCAACGCGATTTTTATAATCAGGAGGTTGATAGAATGT
TCCGAGAACACTGGGAGCATCATTTGCGTTGTGATGGCCTGCCACGTCCC
TATCTTCCCGTCGAAGTACGAACTTTTATGTCCAAAATACGGTTTTACGA
CGAGATTGAAACGAATAATTCAATGGACTGGACCTTGTCGGTGGACGAAC
GCTCTATATTGACTCAGAATATCTTTAGGGTGGACAAAACGCGACGTATG
ATGATGGTCAACAAAGATAATCCAGGCGAACACTATGACCATAACGTTCA
GATGTGTTTGAATGCATTGAAACAAATGGATGCAATGCTGGACAACGAGG
CTGAAATGGTTCGAATGTCAGATAAAAGGCAAAAGGATGTAATTGAAGTT
TACACCGAAGTCGAGGCGGAAATTGGTGATCTCTTTGATCGCCTAACCTA
TCGAGTATTGAGCATGCAGGATGCTTATATGGAATCCAAGGATGGTCGAG
TAGCTGTGTGGAGCTACACGTGTAACCCTTGGAGATTGGATTTGTGGGGG
ACTGCGAAATGTGCCAATTATTTTTGATCAGTTGGAATTGCCAGTAATGT
TGGCCGAATTTAGTGCCACGAGTGTTGAAGTCCAGATACCAAAGAGTGTT
CTTAAAGATTGCGTACTATTCGCAGCTTACACATGGATTTGATACATTTC
GCAAACGCCAGAGCTTCGAAATTGCCGTTAGGCATCGCTCATATCCAAAC
GCTGGGAATAGTGACATAAAAGATTCGGTGTCAACGAATGACATTGCCAC
TCGAATACGAGAATACTTGAATTATGTACACGAGGCGAAGTACCAGACCT
GATGAACTCCTCCCGAAA
UFO12334.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:12:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33286-RB | 3294 | CG33286-RB | 42..998 | 8..955 | 4390 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:12:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20974064..20974455 | 549..158 | 1960 | 100 | Minus |
| 3L | 28110227 | 3L | 20974506..20974659 | 161..8 | 770 | 100 | Minus |
| 3L | 28110227 | 3L | 20973528..20973706 | 907..737 | 530 | 95.5 | Minus |
| 3L | 28110227 | 3L | 20973766..20973867 | 736..634 | 465 | 99 | Minus |
| 3L | 28110227 | 3L | 20973926..20974011 | 633..548 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:12:22 has no hits.
UFO12334.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:32:08 Download gff for
UFO12334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33286-RB | 36..971 | 1..930 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:47:59 Download gff for
UFO12334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33286-RB | 36..971 | 1..930 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:53:28 Download gff for
UFO12334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33286-RB | 36..971 | 1..930 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:53:28 Download gff for
UFO12334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20973505..20973706 | 737..930 | 93 | <- | Minus |
| 3L | 20973766..20973867 | 634..736 | 99 | <- | Minus |
| 3L | 20973926..20974011 | 548..633 | 100 | <- | Minus |
| 3L | 20974066..20974454 | 159..547 | 100 | <- | Minus |
| 3L | 20974509..20974665 | 1..158 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:47:59 Download gff for
UFO12334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20967609..20967765 | 1..158 | 98 | | Minus |
| arm_3L | 20966605..20966806 | 737..930 | 93 | <- | Minus |
| arm_3L | 20966866..20966967 | 634..736 | 99 | <- | Minus |
| arm_3L | 20967026..20967111 | 548..633 | 100 | <- | Minus |
| arm_3L | 20967166..20967554 | 159..547 | 100 | <- | Minus |
