UFO12335.5prime Sequence
1007 bp (860 high quality bases) assembled on 2012-10-16
> UFO12335.5prime
AGTCGACATGGAGTCGAAACGCTCGAAAAAAGGACGCAAATCTCGGCCAT
CTGAGTCCGAGCATCCATCTAACCAACAGCAGGAGCAGCAGCCACATCAC
CATCATCCCTGGGACGAAGACCCTTCGGCAAAGAGTCCCCAAGCAAATAG
GGCAATTCCCAGCACGGGCACAGCACTGACCCGCTTCCTGACCTGCATGG
CACCAGTGATTGTGTCGCTACCTGGCGCTGGAACTGGCCCCACTGAGCAG
CCGACCATACTACTGATCAACGGCATCGCCAGCGATTCCCAGCTAGAGGA
TAAGCAGTCCAAAGCAGCCGCCTTAAAGTTAGCTCTCGATAACAACAACA
GCGAGGCAACAGCACCAGCACCAGCCCAGCCACACCAAGTTCCCACCACT
CCGGGTGGCTCGCATCTCCTGGACTTCGAGTCGCATCTCATCGAGAGCAT
TGCCGACGAGGCCAGTGGCGTTGGGATCAGGGAACTAACTCCGTTCGAGC
AAGAATTGCAGCGGGGCACCTCCAAGGCGGGCACCAATGACACAGACCCA
GTCATAGAGGTAGAACCAGCTGGTGTTAGGACCAAACAGCCTGTGGAAAT
CTCACCGCCGGCACATCAAATCGCCGAGGTTGACGAGACGGCCACTCCGT
CGGAGGAAGTACGTCGCACTGCCGAGCAGCTGGTGATGAGATCGAACAGG
AGCTGATCCAGGCACTCAGCCGGGATGTAGACGAGGCGCAGCGCGTGCAC
GAGGATCAGTCCAGCGAGATCGCGACGAGATCAGCGCACTCACGTCACAG
GTCGAAGTCCAGTTGATGAGCTGACCGGTATCCTTAAAAACAGCCCCAGG
CGGTGATTGTCTTGACTGCCGGCGAGGAGGAGGAGAGCAAAGCCGAACCA
TTTGTCCCTGCTCCAGTGACTGAGCTCGTGGAGGTACCCACTCCAACTGA
GGCTGAAGACAGACGCAGGATCATCGACTCATGCCCAATCAGCAAATCGC
CTGCAGG
UFO12335.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:12:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43078-RH | 8664 | CG43078-RH | 333..1359 | 8..1007 | 4430 | 96.9 | Plus |
| CG43078-RD | 6099 | CG43078-RD | 435..1461 | 8..1007 | 4430 | 96.9 | Plus |
| CG43078-RB | 5763 | CG43078-RB | 435..1461 | 8..1007 | 4430 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:12:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8585970..8586715 | 212..944 | 3040 | 97.6 | Plus |
| 3L | 28110227 | 3L | 8579513..8579624 | 8..119 | 560 | 100 | Plus |
| 3L | 28110227 | 3L | 8581761..8581855 | 118..212 | 475 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:12:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 830..874 | 339..384 | 119 | 76.1 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6548..6628 | 25..105 | 116 | 65.1 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8004..8084 | 25..105 | 116 | 65.1 | Plus |
UFO12335.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:32:09 Download gff for
UFO12335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43078-RH | 333..1282 | 8..944 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:01 Download gff for
UFO12335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43078-RB | 435..1384 | 8..944 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:53:30 Download gff for
UFO12335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43078-RB | 435..1384 | 8..944 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:53:30 Download gff for
UFO12335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8579513..8579624 | 8..119 | 100 | -> | Plus |
| 3L | 8581763..8581855 | 120..212 | 100 | -> | Plus |
| 3L | 8585971..8586715 | 213..944 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:01 Download gff for
UFO12335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8572613..8572724 | 8..119 | 100 | -> | Plus |
| arm_3L | 8574863..8574955 | 120..212 | 100 | -> | Plus |
| arm_3L | 8579071..8579815 | 213..944 | 97 | == | Plus |
