UFO12336.5prime Sequence
986 bp (498 high quality bases) assembled on 2012-10-16
> UFO12336.5prime
AGTCGACATGTCGCTGCCCAACGAACAGACAAACTTGCCGCACAATCCCA
GCCAACCAGCATCCGCAGACACACAGACACCAGCCACGGCAACAGGAACC
ACAACACCATCCACACCAACACCATCCACAAGAACCACACAACCAAATGA
GCTGAAACACCGCCTGACGCCACTGAATGTGCGTCGTTTATCGGGCTACG
TTAATCCGCAAGCGATCAGCGATAATGCTGGCGATGATCCCCCGCCCACC
ACCATTAACATTGGCCTCTTCAACAACAATAACAATAATAATACAAATAA
TAATAATAATAATAACAACAACAACAACAACACAGCATCAACAACGCCCC
CCATCTGCATATGCCAACACCACCCAAATATACCAACAAACAGTTGTCCA
CACCTGACAGCAAACAACACCCGCCTAGAATGTGGCACCGGATGATAAAA
TACAGAATTGTTTTACCATTTTTCAATGGGAAAACGATCCCGACCAATGA
AGAAAATTGGTCGGGGCCCTACCACATTTCGGACAAACCGGTTTCACTAA
AGCCTCAATCATTCACGACGTTCCATAGCATCCCTCCGAAACCGGGATCT
TGGAACCGGTGAGCGGCGGCGGCGGGCGGCGGCGGCGGCGGCGGCGGCGG
CGGCGGAATAGGAAGGAGCAGGTGGCGGCGGCGGCGGCGGGCGGGAGGCA
ATGGGCGGTATATCGGATCGGGTGCCTTGGGTGGCAGGCGGAATGCCTCT
CCAGCATTTGCCGGGCAATCAATTGGCCAGCCTCCGAAGGAAAAATGTTG
GGCCGCTCCATTCGACCCCGGGCAATCCAAGCAGGGAAGAAGGTGACAAA
CTTATTCCTTACCTGCAAGGTATTCCAATTCCGGTTCTTTTCTGGCCCGG
GAATGTGTACCATTCGGGAAGCTGGCCATTGTCCTTGGGGAACCCGTTGA
AAAAAATGGTATGTCCTTCCAAGAACCGTTAAGCCG
UFO12336.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:12:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33181-RH | 4107 | CG33181-RH | 965..1846 | 8..976 | 2625 | 89.9 | Plus |
| CG33181-RG | 4232 | CG32714-RG | 1090..1971 | 8..976 | 2625 | 89.9 | Plus |
| CG33181-RF | 4113 | CG32714-RF | 971..1852 | 8..976 | 2625 | 89.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:12:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8510242..8510632 | 8..403 | 1750 | 98.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:12:28 has no hits.
UFO12336.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:32:09 Download gff for
UFO12336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33181-RF | 961..1564 | 1..637 | 93 | -> | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:03 Download gff for
UFO12336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33181-RF | 962..1565 | 1..637 | 93 | -> | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:53:33 Download gff for
UFO12336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33181-RF | 962..1565 | 1..637 | 93 | -> | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:53:33 Download gff for
UFO12336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8510233..8510704 | 1..486 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:03 Download gff for
UFO12336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8404266..8404737 | 1..486 | 95 | -> | Plus |
