UFO12339.5prime Sequence
825 bp (508 high quality bases) assembled on 2012-10-16
> UFO12339.5prime
AGTCGACATGCACATCAAGCAGATTATTATACAAGGCTTCAAGAGTTACA
AGGACCAGACGGTGGTGGAACCATTCGACAAGCGCCATAACGTTGTTGTT
GGACGTAATGGCTCCGGGAAGAGCAACTTCTTCTACGCCATCCAGTTTGT
GCTAAGCGATGAGTTCACCCACTTGCGGCCGGAGCAGCGTCAGTCGCTTC
TGCACGAGGGAACAGGTGCCCGCGTCATCTCCGCCTATGTGGAGATCATC
TTCGACAACTCGGACAACCGAGTTCCAATCGACAAAGAAGAGATCTTTCT
GGGGCGCGGTGATTGGCGCCAAAAAGGACCAGTACTTCCTCAACAAAAAG
GTGGGGGCCCCCCCAATGAGGTGGTCAAATCTGCTGGAATCGGCTGGTTT
TTCCAGTTCAAATCCCTACTACATTGTCAAGCAGGGCAAAAATCAAATCA
GATGGCAACTGCCGCCGATTCCTATCGTCTCAAGCTGCTACGCGAAGTCG
CGGGAACGCGTTTTTACGACGAACGGAAGGAGGGAGTCGTTAAATTTTAT
TGCGCGAGACGGACAGCAAGGTGGAGAAAATCAGCGAGTACCTAAAGACC
ATCGAGGATCGGCTCCAGACGCTCGAAGAGGGAGATGGAAGAGCTAAAGG
AGTACCAGAAGTGGGACAGACGCGCCGCACGCTAGAGTATATACGCTACG
AACCGAGCTGAGGACACCAAGATGCTCTCGACGAGCTCAAGCTGCAGCGC
AGGTCGTCTCGGACAAAGAGATCTACACATGAGATTCAGACGCACAAGAG
AGATCAGGATGTGCAAGATCTAAGA
UFO12339.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:13:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SMC3-RA | 4020 | CG9802-RA | 74..886 | 8..816 | 3400 | 95.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:13:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16592257..16592746 | 771..278 | 1655 | 94.4 | Minus |
| X | 23542271 | X | 16592944..16593084 | 277..137 | 705 | 100 | Minus |
| X | 23542271 | X | 16593160..16593277 | 137..20 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:13:06 has no hits.
UFO12339.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:32:19 Download gff for
UFO12339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cap-RA | 58..845 | 1..789 | 95 | -> | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:28 Download gff for
UFO12339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cap-RA | 68..855 | 1..789 | 95 | -> | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:53:57 Download gff for
UFO12339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMC3-RA | 68..855 | 1..789 | 95 | -> | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:53:57 Download gff for
UFO12339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16592213..16592746 | 278..807 | 93 | <- | Minus |
| X | 16592944..16593083 | 138..277 | 100 | <- | Minus |
| X | 16593160..16593274 | 23..137 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:28 Download gff for
UFO12339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16486246..16486779 | 278..807 | 93 | <- | Minus |
| arm_X | 16486977..16487116 | 138..277 | 100 | <- | Minus |
| arm_X | 16487193..16487307 | 23..137 | 100 | <- | Minus |
