UFO12341.5prime Sequence
773 bp (652 high quality bases) assembled on 2012-10-16
> UFO12341.5prime
AGTCGACATGGTCGATCCATTAAAAATCTTTTGGGTTTTGACAAATAGCA
CCTATTTGGTTACAAAATTTGTACGCATTGGTATTGCCGACAAAAACGAT
TCACCGCCGTATTTCGATAGATTTCTGTACGAAACTGAAATCGATGAAAA
TGCCGACTTGCAGAGCACTGTCCTCACTGTCAACGCCAAGGATCACAATG
AGTCGACGAATATTCGATACCAGATCACAGGCGGTAACATAGGCAATGCA
TTTGCCGTACAGAACACCACCGGTGTCATTTACGTGGCAAGTCCACTTGA
CTACGAAACGAGGCCAAGGTATGAACTGCGCCTGGAGGCAACTCGCAATC
GCAAAAAATAACTACACCACCGTTGTGATCAACGTTCGCGATGTCAACGA
TAATCCACCGGTATTCGATCGTCAAACATATCGTACACAAATCACTGAGG
AAGACGATCGCAATCTGCCCAAACGCATTCTGCAGGTCACAGCCACCGAT
GGCGATGTAGATAGACCAATAAATATTGTATATTTCCTGACTGGTCAGGG
CATCGACCCTGATATTCCAGCGAATAGTAAATTTGATATAAATCGCACGA
CGGGCGATATTTTTGTTCTCAAGCCCTGGACCGAGATCAGCCAATGGGAG
GCCACAGTGGCGCTTACAGTATTTGCCAGGACGAGGGTGGCCGAGGGCTG
TAGGCTATGCGACTTCAGTTGACCTAAGACTCACGACATTGCCGCCGCAG
TTTCCGCAGGCATCTACTTGGTA
UFO12341.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:13:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CadN2-RD | 7914 | CG42829-RD | 1181..1953 | 8..769 | 3405 | 97.3 | Plus |
| CadN2-RC | 7220 | CG42829-RC | 487..1259 | 8..769 | 3405 | 97.3 | Plus |
| CadN-RL | 10427 | CG7100-RL | 4807..5457 | 65..711 | 445 | 72.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:13:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17809236..17809403 | 487..319 | 795 | 99.4 | Minus |
| 2L | 23513712 | 2L | 17815574..17815718 | 203..59 | 725 | 100 | Minus |
| 2L | 23513712 | 2L | 17806368..17806508 | 623..483 | 690 | 99.3 | Minus |
| 2L | 23513712 | 2L | 17810823..17810938 | 319..204 | 580 | 100 | Minus |
| 2L | 23513712 | 2L | 17827421..17827472 | 59..8 | 260 | 100 | Minus |
| 2L | 23513712 | 2L | 17803405..17803496 | 711..624 | 215 | 92.4 | Minus |
| 2L | 23513712 | 2L | 17666608..17666737 | 489..360 | 200 | 76.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:13:08 has no hits.
UFO12341.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:32:20 Download gff for
UFO12341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CadN2-RC | 480..1263 | 1..772 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:30 Download gff for
UFO12341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CadN2-RC | 480..1263 | 1..772 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:53:59 Download gff for
UFO12341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CadN2-RC | 480..1263 | 1..772 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:53:59 Download gff for
UFO12341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17815574..17815723 | 56..203 | 98 | <- | Minus |
| 2L | 17827425..17827476 | 1..55 | 92 | | Minus |
| 2L | 17806368..17806505 | 486..623 | 99 | <- | Minus |
| 2L | 17809238..17809402 | 320..485 | 99 | <- | Minus |
| 2L | 17810823..17810938 | 204..319 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:30 Download gff for
UFO12341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17810823..17810938 | 204..319 | 100 | <- | Minus |
| arm_2L | 17806368..17806505 | 486..623 | 99 | <- | Minus |
| arm_2L | 17809238..17809402 | 320..485 | 99 | <- | Minus |
| arm_2L | 17815574..17815723 | 56..203 | 98 | <- | Minus |
| arm_2L | 17827425..17827476 | 1..55 | 92 | | Minus |
